Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm37020-201ENSMUST00000195303 992 ntBASIC11.71□□□□□ -0.53
Traf1P39428 Gm37963-201ENSMUST00000195351 613 ntTSL 3 BASIC11.71□□□□□ -0.53
Traf1P39428 BB187690-201ENSMUST00000198619 1176 ntBASIC11.71□□□□□ -0.53
Traf1P39428 CT025689.5-201ENSMUST00000224316 986 ntBASIC11.71□□□□□ -0.53
Traf1P39428 Gm5513-201ENSMUST00000072982 1218 ntBASIC11.71□□□□□ -0.53
Traf1P39428 Gm10053-201ENSMUST00000073080 949 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Traf1P39428 Gm43274-201ENSMUST00000202545 5000 ntBASIC11.71□□□□□ -0.53
Traf1P39428 Rxfp2-202ENSMUST00000110496 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Traf1P39428 Map4-204ENSMUST00000164930 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Traf1P39428 Pax3-201ENSMUST00000004994 3078 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Traf1P39428 Gpat4-201ENSMUST00000167004 5518 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Traf1P39428 Cfap100-201ENSMUST00000062750 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Traf1P39428 Edaradd-201ENSMUST00000179308 6668 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Traf1P39428 Gm14858-201ENSMUST00000138614 1758 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Traf1P39428 Ndufab1-201ENSMUST00000033157 3479 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Traf1P39428 AC158777.1-201ENSMUST00000226216 1724 ntBASIC11.71□□□□□ -0.54
Traf1P39428 Cfap61-204ENSMUST00000126415 2256 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Traf1P39428 Gm11427-201ENSMUST00000117952 1696 ntBASIC11.71□□□□□ -0.54
Traf1P39428 Rab3gap2-201ENSMUST00000069652 7052 ntAPPRIS P2 TSL 5 BASIC11.71□□□□□ -0.54
Traf1P39428 Gm37451-201ENSMUST00000194718 2167 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Traf1P39428 Nrf1-203ENSMUST00000069831 1625 ntTSL 5 BASIC11.71□□□□□ -0.54
Traf1P39428 Supt20-201ENSMUST00000029315 2112 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Traf1P39428 Arfgap3-201ENSMUST00000067215 2619 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Traf1P39428 Slc35c1-201ENSMUST00000067631 3139 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Traf1P39428 Usp47-206ENSMUST00000215510 4697 ntTSL 5 BASIC11.71□□□□□ -0.54
Traf1P39428 Tmem74bos-202ENSMUST00000149319 2090 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Traf1P39428 Rasgrp4-201ENSMUST00000032811 4621 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Traf1P39428 Rasgrp4-202ENSMUST00000094617 4617 ntTSL 5 BASIC11.71□□□□□ -0.54
Traf1P39428 Nrros-204ENSMUST00000126869 2540 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Traf1P39428 Lpin3-201ENSMUST00000040872 3458 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Traf1P39428 Gm26690-201ENSMUST00000181457 1997 ntTSL 5 BASIC11.7□□□□□ -0.54
Traf1P39428 Cd3e-201ENSMUST00000102832 1462 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Traf1P39428 Zfp629-203ENSMUST00000122066 5850 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Traf1P39428 Mpo-203ENSMUST00000121303 2409 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Traf1P39428 Gm45110-201ENSMUST00000205704 1402 ntBASIC11.7□□□□□ -0.54
Traf1P39428 Gm13498-201ENSMUST00000119159 2166 ntBASIC11.7□□□□□ -0.54
Traf1P39428 Gm9271-201ENSMUST00000185988 2580 ntBASIC11.7□□□□□ -0.54
Traf1P39428 Wdr95-207ENSMUST00000202902 2574 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Traf1P39428 Gm12345-201ENSMUST00000119288 898 ntBASIC11.7□□□□□ -0.54
Traf1P39428 Gm14650-201ENSMUST00000120400 889 ntBASIC11.7□□□□□ -0.54
Traf1P39428 Zfp738-202ENSMUST00000125495 712 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Traf1P39428 Actb-207ENSMUST00000167721 1242 ntTSL 5 BASIC11.7□□□□□ -0.54
Traf1P39428 Gm6216-201ENSMUST00000182390 687 ntBASIC11.7□□□□□ -0.54
Traf1P39428 Dhx40-201ENSMUST00000018569 3813 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Traf1P39428 4930515G16Rik-201ENSMUST00000199440 1256 ntBASIC11.7□□□□□ -0.54
Traf1P39428 Gm7924-201ENSMUST00000203975 785 ntBASIC11.7□□□□□ -0.54
Traf1P39428 AC123061.1-201ENSMUST00000228021 999 ntBASIC11.7□□□□□ -0.54
Traf1P39428 AC154683.1-201ENSMUST00000228409 1284 ntBASIC11.7□□□□□ -0.54
Traf1P39428 Iah1-201ENSMUST00000076813 1141 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Traf1P39428 Sh3bgrl-201ENSMUST00000033598 2882 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Traf1P39428 Ltbp1-203ENSMUST00000112516 5140 ntAPPRIS P3 TSL 5 BASIC11.7□□□□□ -0.54
Traf1P39428 Rsrc2-208ENSMUST00000182309 1595 ntTSL 5 BASIC11.7□□□□□ -0.54
Traf1P39428 Tcn2-205ENSMUST00000109991 1943 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Traf1P39428 Adcy8-202ENSMUST00000228014 6900 ntAPPRIS ALT2 BASIC11.7□□□□□ -0.54
Traf1P39428 Adgrf3-201ENSMUST00000088117 3099 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Traf1P39428 Gtf2h3-201ENSMUST00000031333 2672 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Traf1P39428 Gm5310-201ENSMUST00000197861 1511 ntBASIC11.7□□□□□ -0.54
Traf1P39428 Ehmt1-205ENSMUST00000114432 4539 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Traf1P39428 AU041133-202ENSMUST00000201286 2634 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Traf1P39428 Gpa33-204ENSMUST00000166860 2227 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Traf1P39428 Fam187b-201ENSMUST00000058093 1485 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Traf1P39428 Nipbl-201ENSMUST00000052965 8815 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Traf1P39428 Igsf6-201ENSMUST00000047194 2175 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Traf1P39428 Prdm16-203ENSMUST00000097759 8544 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Traf1P39428 Invs-201ENSMUST00000030029 5633 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Traf1P39428 Vil1-201ENSMUST00000027366 3124 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Traf1P39428 Zfp111-202ENSMUST00000073833 3079 ntAPPRIS P3 TSL 5 BASIC11.69□□□□□ -0.54
Traf1P39428 Kdm4a-204ENSMUST00000106406 4663 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Traf1P39428 Polr3b-201ENSMUST00000077175 4975 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Traf1P39428 1700047M11Rik-202ENSMUST00000189594 2607 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Traf1P39428 Cers3-201ENSMUST00000066475 3250 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Traf1P39428 Ptprm-201ENSMUST00000037974 5186 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Traf1P39428 Hcar2-201ENSMUST00000057145 1930 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Traf1P39428 Plac9b-201ENSMUST00000100809 388 ntTSL 2 BASIC11.69□□□□□ -0.54
Traf1P39428 Gm25723-201ENSMUST00000104530 126 ntBASIC11.69□□□□□ -0.54
Traf1P39428 Sh3bgrl3-202ENSMUST00000105879 518 ntTSL 3 BASIC11.69□□□□□ -0.54
Traf1P39428 S100a16-205ENSMUST00000107334 879 ntAPPRIS P1 TSL 3 BASIC11.69□□□□□ -0.54
Traf1P39428 Cst10-202ENSMUST00000109938 729 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
Traf1P39428 Rhox4a-201ENSMUST00000115194 925 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Traf1P39428 Gm11540-201ENSMUST00000117457 780 ntBASIC11.69□□□□□ -0.54
Traf1P39428 Fgf1-203ENSMUST00000117566 418 ntTSL 5 BASIC11.69□□□□□ -0.54
Traf1P39428 Gm5054-201ENSMUST00000119351 453 ntBASIC11.69□□□□□ -0.54
Traf1P39428 Gm11800-201ENSMUST00000120050 579 ntBASIC11.69□□□□□ -0.54
Traf1P39428 Gm14829-201ENSMUST00000121499 1138 ntBASIC11.69□□□□□ -0.54
Traf1P39428 Rps9-205ENSMUST00000126562 896 ntTSL 2 BASIC11.69□□□□□ -0.54
Traf1P39428 Gm44805-201ENSMUST00000127648 765 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Traf1P39428 Gm12676-201ENSMUST00000149078 808 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Traf1P39428 Gm14174-201ENSMUST00000153158 161 ntTSL 5 BASIC11.69□□□□□ -0.54
Traf1P39428 Gm15587-202ENSMUST00000156403 709 ntTSL 5 BASIC11.69□□□□□ -0.54
Traf1P39428 Speer4f2-201ENSMUST00000166086 1278 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Traf1P39428 4933407I05Rik-202ENSMUST00000213467 420 ntTSL 2 BASIC11.69□□□□□ -0.54
Traf1P39428 3830406C13Rik-213ENSMUST00000225294 1191 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Traf1P39428 Cst10-201ENSMUST00000047008 804 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Traf1P39428 Fthl17a-201ENSMUST00000048382 835 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Traf1P39428 Olfr578-201ENSMUST00000056235 942 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Traf1P39428 Cks2-201ENSMUST00000075853 692 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Traf1P39428 Trp73-205ENSMUST00000133533 4752 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Traf1P39428 Uspl1-202ENSMUST00000100410 3148 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Traf1P39428 Zc3hav1-202ENSMUST00000114898 3052 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Traf1P39428 Fcrl1-206ENSMUST00000194786 1540 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 113.2 ms