Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm20395-201ENSMUST00000173799 690 ntTSL 3 BASIC15.29■□□□□ 0.04
Cux1P53564 Gm43802-201ENSMUST00000197826 637 ntBASIC15.29■□□□□ 0.04
Cux1P53564 Rnf219-204ENSMUST00000228448 1056 ntAPPRIS ALT2 BASIC15.29■□□□□ 0.04
Cux1P53564 Gm8024-201ENSMUST00000167099 1408 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Cux1P53564 Gm6482-201ENSMUST00000168128 1410 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Cux1P53564 Gm7951-201ENSMUST00000171388 1408 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Cux1P53564 Tor1aip2-204ENSMUST00000111754 2491 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cux1P53564 Fbxl5-202ENSMUST00000087465 4237 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cux1P53564 Pvt1-201ENSMUST00000180432 1563 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cux1P53564 Ticam1-201ENSMUST00000058136 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cux1P53564 Rbm3-201ENSMUST00000040010 2792 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cux1P53564 Kif2b-201ENSMUST00000061019 2244 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Cux1P53564 Lnx1-203ENSMUST00000113531 3098 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cux1P53564 Gm38148-201ENSMUST00000195166 3012 ntBASIC15.29■□□□□ 0.04
Cux1P53564 9130015G15Rik-201ENSMUST00000208621 1973 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cux1P53564 Ywhaz-201ENSMUST00000022894 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cux1P53564 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Cux1P53564 Gm40617-201ENSMUST00000218840 2420 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cux1P53564 Exoc7-202ENSMUST00000106411 3205 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cux1P53564 Gm12296-201ENSMUST00000144922 3220 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cux1P53564 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cux1P53564 Gm8310-201ENSMUST00000117526 1193 ntBASIC15.28■□□□□ 0.04
Cux1P53564 Gm14044-201ENSMUST00000117531 447 ntBASIC15.28■□□□□ 0.04
Cux1P53564 Gm20945-201ENSMUST00000178122 1145 ntBASIC15.28■□□□□ 0.04
Cux1P53564 Zfp422-ps-201ENSMUST00000182230 706 ntBASIC15.28■□□□□ 0.04
Cux1P53564 Gm27149-201ENSMUST00000184716 1266 ntBASIC15.28■□□□□ 0.04
Cux1P53564 Gm27483-201ENSMUST00000184983 71 ntBASIC15.28■□□□□ 0.04
Cux1P53564 Gm7516-201ENSMUST00000186198 706 ntBASIC15.28■□□□□ 0.04
Cux1P53564 Fxyd7-202ENSMUST00000206341 620 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cux1P53564 Gm32710-201ENSMUST00000210677 618 ntTSL 5 BASIC15.28■□□□□ 0.04
Cux1P53564 AC114645.2-201ENSMUST00000214308 791 ntTSL 3 BASIC15.28■□□□□ 0.04
Cux1P53564 Cypt2-201ENSMUST00000041758 697 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cux1P53564 Fxyd7-201ENSMUST00000073892 693 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cux1P53564 Mfsd4b5-203ENSMUST00000164566 2372 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cux1P53564 Efcab12-203ENSMUST00000184428 2384 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Cux1P53564 Surf6-201ENSMUST00000047632 2971 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cux1P53564 Ica1-204ENSMUST00000115520 1876 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
Cux1P53564 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Cux1P53564 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cux1P53564 C820005J03Rik-201ENSMUST00000195997 2312 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cux1P53564 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
Cux1P53564 Gm43813-201ENSMUST00000196847 2294 ntTSL 5 BASIC15.28■□□□□ 0.04
Cux1P53564 4930488L21Rik-202ENSMUST00000212638 3164 ntTSL 5 BASIC15.28■□□□□ 0.04
Cux1P53564 Cast-211ENSMUST00000223206 5141 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Cux1P53564 Abhd18-201ENSMUST00000108077 3277 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cux1P53564 4933408B17Rik-201ENSMUST00000056932 2362 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cux1P53564 4930519G04Rik-201ENSMUST00000031547 2092 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cux1P53564 Zfand1-201ENSMUST00000037839 1610 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cux1P53564 Gm32255-201ENSMUST00000219456 1349 ntBASIC15.28■□□□□ 0.04
Cux1P53564 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cux1P53564 Cd163l1-201ENSMUST00000084460 3454 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
Cux1P53564 Camk2a-202ENSMUST00000039904 1734 ntTSL 5 BASIC15.28■□□□□ 0.04
Cux1P53564 Pcdh1-202ENSMUST00000159405 3880 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Cux1P53564 1700019N19Rik-202ENSMUST00000166692 983 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
Cux1P53564 Cdk2ap2-203ENSMUST00000174149 386 ntTSL 2 BASIC15.27■□□□□ 0.04
Cux1P53564 Car1-203ENSMUST00000181860 1194 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cux1P53564 Gm4929-201ENSMUST00000182021 992 ntBASIC15.27■□□□□ 0.04
Cux1P53564 Gm26964-201ENSMUST00000182516 832 ntTSL 2 BASIC15.27■□□□□ 0.04
Cux1P53564 Gm43049-201ENSMUST00000198099 462 ntTSL 3 BASIC15.27■□□□□ 0.04
Cux1P53564 Gm7594-201ENSMUST00000218595 871 ntBASIC15.27■□□□□ 0.04
Cux1P53564 Tff3-201ENSMUST00000024827 493 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cux1P53564 Gm13178-201ENSMUST00000036876 1227 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Cux1P53564 Lgals9-201ENSMUST00000073001 1074 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
Cux1P53564 Tigit-201ENSMUST00000096065 963 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cux1P53564 Hdhd2-201ENSMUST00000026485 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cux1P53564 Gm7356-201ENSMUST00000186636 1527 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Cux1P53564 Gm7358-201ENSMUST00000189454 1527 ntBASIC15.27■□□□□ 0.04
Cux1P53564 Rasgrp4-213ENSMUST00000204845 3182 ntTSL 5 BASIC15.27■□□□□ 0.04
Cux1P53564 Ddr1-202ENSMUST00000097333 3593 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cux1P53564 Hmbox1-205ENSMUST00000176128 2958 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.04
Cux1P53564 Smtn-210ENSMUST00000170588 3386 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cux1P53564 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cux1P53564 1700023G09Rik-201ENSMUST00000194513 1460 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Cux1P53564 Pdzrn4-202ENSMUST00000169942 3851 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cux1P53564 Znrf3-203ENSMUST00000172492 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cux1P53564 Gm29367-201ENSMUST00000190911 1327 ntBASIC15.27■□□□□ 0.03
Cux1P53564 Inpp4a-206ENSMUST00000132615 3038 ntTSL 5 BASIC15.27■□□□□ 0.03
Cux1P53564 Rasgrp4-210ENSMUST00000203070 3008 ntTSL 5 BASIC15.27■□□□□ 0.03
Cux1P53564 Gpm6b-201ENSMUST00000060210 2858 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cux1P53564 Pcgf2-207ENSMUST00000179765 2485 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cux1P53564 Gm29326-201ENSMUST00000185541 2451 ntBASIC15.27■□□□□ 0.03
Cux1P53564 Lamc2-203ENSMUST00000185356 4916 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cux1P53564 Olfr5-202ENSMUST00000209866 2980 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Cux1P53564 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cux1P53564 Mup9-201ENSMUST00000107506 721 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cux1P53564 Gm18859-201ENSMUST00000118792 825 ntBASIC15.27■□□□□ 0.03
Cux1P53564 Gm13864-201ENSMUST00000119745 785 ntBASIC15.27■□□□□ 0.03
Cux1P53564 Mup9-207ENSMUST00000132829 598 ntTSL 5 BASIC15.27■□□□□ 0.03
Cux1P53564 Zfp978-202ENSMUST00000154154 1250 ntAPPRIS P5 TSL 5 BASIC15.27■□□□□ 0.03
Cux1P53564 Gm16470-201ENSMUST00000182456 998 ntBASIC15.27■□□□□ 0.03
Cux1P53564 Gm2071-201ENSMUST00000193335 774 ntBASIC15.27■□□□□ 0.03
Cux1P53564 Ldhc-205ENSMUST00000211784 829 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Cux1P53564 Mup11-201ENSMUST00000084544 601 ntTSL 5 BASIC15.27■□□□□ 0.03
Cux1P53564 Rpl7a-ps8-201ENSMUST00000094754 801 ntBASIC15.27■□□□□ 0.03
Cux1P53564 Mup16-201ENSMUST00000095051 721 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cux1P53564 Olfr1199-201ENSMUST00000099813 933 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
Cux1P53564 Gm38379-201ENSMUST00000194351 1525 ntBASIC15.27■□□□□ 0.03
Cux1P53564 1810059H22Rik-201ENSMUST00000203249 1526 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Cux1P53564 Rrh-202ENSMUST00000171313 1759 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cux1P53564 Gls-203ENSMUST00000114512 2042 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 39 ms