Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Cx3cl1-206ENSMUST00000211956 470 ntTSL 2 BASIC15.32■□□□□ 0.04
Cux1P53564 Rpl10-ps5-201ENSMUST00000212707 642 ntBASIC15.32■□□□□ 0.04
Cux1P53564 Gm3379-201ENSMUST00000222259 642 ntBASIC15.32■□□□□ 0.04
Cux1P53564 Fmnl1-202ENSMUST00000042286 3806 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cux1P53564 Mir181c-201ENSMUST00000083549 89 ntBASIC15.32■□□□□ 0.04
Cux1P53564 Duox2-201ENSMUST00000053734 5744 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
Cux1P53564 Snap47-201ENSMUST00000010038 1896 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cux1P53564 Shcbp1-201ENSMUST00000022945 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cux1P53564 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cux1P53564 Adam1b-201ENSMUST00000079368 3338 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Cux1P53564 Grin1-208ENSMUST00000114318 3920 ntTSL 5 BASIC15.31■□□□□ 0.04
Cux1P53564 Clgn-201ENSMUST00000002259 3902 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cux1P53564 Igsf3-202ENSMUST00000195164 3876 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Cux1P53564 Dlgap4-206ENSMUST00000109568 3256 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Cux1P53564 Gm36426-201ENSMUST00000222903 1795 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Cux1P53564 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Cux1P53564 2810404F17Rik-201ENSMUST00000156615 1704 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Cux1P53564 Lpar1-205ENSMUST00000107575 3421 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cux1P53564 Mtus1-202ENSMUST00000059115 6548 ntTSL 5 BASIC15.31■□□□□ 0.04
Cux1P53564 Tpm3-204ENSMUST00000119570 2233 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Cux1P53564 Avpr2-202ENSMUST00000101470 2787 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Cux1P53564 D330041H03Rik-207ENSMUST00000181760 1362 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Cux1P53564 Gm43847-201ENSMUST00000200070 1940 ntBASIC15.31■□□□□ 0.04
Cux1P53564 Agmo-204ENSMUST00000160390 2194 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Cux1P53564 Immt-205ENSMUST00000166938 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cux1P53564 Tro-201ENSMUST00000087253 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cux1P53564 Gm19611-201ENSMUST00000216401 1865 ntBASIC15.31■□□□□ 0.04
Cux1P53564 Gm15832-201ENSMUST00000146314 1832 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Cux1P53564 Gfi1b-204ENSMUST00000164290 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cux1P53564 Gm37954-201ENSMUST00000195400 2071 ntBASIC15.31■□□□□ 0.04
Cux1P53564 Tpp2-201ENSMUST00000087933 4649 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Cux1P53564 Kdm3a-202ENSMUST00000167220 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cux1P53564 Cgrrf1-203ENSMUST00000133989 873 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Cux1P53564 Gm28462-201ENSMUST00000185217 374 ntTSL 5 BASIC15.31■□□□□ 0.04
Cux1P53564 Gm28406-201ENSMUST00000186516 397 ntTSL 5 BASIC15.31■□□□□ 0.04
Cux1P53564 Gm28348-201ENSMUST00000187833 397 ntTSL 5 BASIC15.31■□□□□ 0.04
Cux1P53564 Gm29404-201ENSMUST00000187914 397 ntTSL 5 BASIC15.31■□□□□ 0.04
Cux1P53564 Gm29003-202ENSMUST00000190434 453 ntTSL 5 BASIC15.31■□□□□ 0.04
Cux1P53564 Gm28313-201ENSMUST00000191411 397 ntTSL 5 BASIC15.31■□□□□ 0.04
Cux1P53564 Gm37427-201ENSMUST00000192356 906 ntTSL 5 BASIC15.31■□□□□ 0.04
Cux1P53564 Gm35670-201ENSMUST00000192493 397 ntTSL 5 BASIC15.31■□□□□ 0.04
Cux1P53564 Gm37656-201ENSMUST00000192673 397 ntTSL 5 BASIC15.31■□□□□ 0.04
Cux1P53564 Gm37561-201ENSMUST00000195221 368 ntTSL 5 BASIC15.31■□□□□ 0.04
Cux1P53564 Gm7384-201ENSMUST00000203682 530 ntBASIC15.31■□□□□ 0.04
Cux1P53564 Gm38941-201ENSMUST00000208606 529 ntBASIC15.31■□□□□ 0.04
Cux1P53564 AC133156.2-201ENSMUST00000226865 784 ntBASIC15.31■□□□□ 0.04
Cux1P53564 AC139130.1-201ENSMUST00000228281 620 ntBASIC15.31■□□□□ 0.04
Cux1P53564 Olfr1512-201ENSMUST00000071221 942 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Cux1P53564 Fut4-201ENSMUST00000061498 4074 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Cux1P53564 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cux1P53564 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cux1P53564 Nfe2l1-203ENSMUST00000107658 4219 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cux1P53564 Zcwpw1-201ENSMUST00000035852 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cux1P53564 Slc22a14-201ENSMUST00000093775 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cux1P53564 Atxn1-203ENSMUST00000180110 3901 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cux1P53564 Cnga3-204ENSMUST00000195272 2197 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Cux1P53564 Arhgap24-205ENSMUST00000112853 2853 ntTSL 5 BASIC15.31■□□□□ 0.04
Cux1P53564 Zfp672-201ENSMUST00000057836 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cux1P53564 Pcdhb2-201ENSMUST00000056522 2813 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Cux1P53564 Mei1-201ENSMUST00000089178 3974 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Cux1P53564 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Cux1P53564 Rims2-204ENSMUST00000226410 3685 ntBASIC15.3■□□□□ 0.04
Cux1P53564 Slc2a4rg-ps-201ENSMUST00000127559 2976 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Cux1P53564 Rab3gap1-207ENSMUST00000212506 2967 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Cux1P53564 Nrxn1-225ENSMUST00000197268 2280 ntTSL 3 BASIC15.3■□□□□ 0.04
Cux1P53564 Epb41-207ENSMUST00000105975 5235 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Cux1P53564 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cux1P53564 Qsox1-201ENSMUST00000035325 3348 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cux1P53564 Hist4h4-201ENSMUST00000179285 2863 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Cux1P53564 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cux1P53564 Lmo7-201ENSMUST00000100337 6092 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cux1P53564 1700034J05Rik-201ENSMUST00000036592 3007 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cux1P53564 Clec4n-202ENSMUST00000112554 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cux1P53564 Ccdc28a-205ENSMUST00000174592 882 ntTSL 5 BASIC15.3■□□□□ 0.04
Cux1P53564 Gm28065-201ENSMUST00000185290 833 ntTSL 3 BASIC15.3■□□□□ 0.04
Cux1P53564 Gm5550-201ENSMUST00000198658 1076 ntBASIC15.3■□□□□ 0.04
Cux1P53564 Clec4n-206ENSMUST00000205129 363 ntTSL 5 BASIC15.3■□□□□ 0.04
Cux1P53564 Clrn2-201ENSMUST00000053250 944 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cux1P53564 Iba57-201ENSMUST00000054523 4021 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cux1P53564 Sez6l-203ENSMUST00000197425 3199 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Cux1P53564 AC100729.1-201ENSMUST00000225458 1454 ntBASIC15.3■□□□□ 0.04
Cux1P53564 Mfap3l-201ENSMUST00000034066 1896 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cux1P53564 Slc5a4a-201ENSMUST00000020450 2055 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
Cux1P53564 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cux1P53564 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cux1P53564 Nol4-204ENSMUST00000097651 4549 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Cux1P53564 Gm14164-202ENSMUST00000128577 1999 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Cux1P53564 Pex13-201ENSMUST00000020523 4146 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cux1P53564 Txndc16-203ENSMUST00000123879 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cux1P53564 Dcun1d3-202ENSMUST00000098080 3072 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cux1P53564 Gfra1-209ENSMUST00000169850 3224 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cux1P53564 Arhgap11a-202ENSMUST00000110947 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cux1P53564 Stat5b-202ENSMUST00000107358 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cux1P53564 Zfyve1-203ENSMUST00000221919 4420 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cux1P53564 Gm14698-201ENSMUST00000096420 4226 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Cux1P53564 Trpc6-202ENSMUST00000214596 2913 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cux1P53564 Gm26288-201ENSMUST00000104168 132 ntBASIC15.29■□□□□ 0.04
Cux1P53564 Gm12161-201ENSMUST00000121454 361 ntBASIC15.29■□□□□ 0.04
Cux1P53564 Gm23985-201ENSMUST00000157140 124 ntBASIC15.29■□□□□ 0.04
Cux1P53564 Gm17197-201ENSMUST00000163160 452 ntTSL 2 BASIC15.29■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 94.1 ms