Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Dhcr7-211ENSMUST00000207143 1652 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Traf1P39428 Tram2-201ENSMUST00000037998 6492 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Traf1P39428 Gm35963-201ENSMUST00000211762 1425 ntTSL 5 BASIC11.77□□□□□ -0.52
Traf1P39428 Exoc3l4-210ENSMUST00000223050 3418 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Traf1P39428 Pax6-207ENSMUST00000111087 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Traf1P39428 Plbd1-201ENSMUST00000032336 2010 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Traf1P39428 Gm20953-201ENSMUST00000216399 2614 ntBASIC11.77□□□□□ -0.52
Traf1P39428 Lasp1-201ENSMUST00000043843 3540 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Traf1P39428 Nrp1-201ENSMUST00000026917 3597 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Traf1P39428 Fndc7-207ENSMUST00000180063 4820 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.52
Traf1P39428 Ubap2l-203ENSMUST00000090908 3629 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Traf1P39428 Spag6l-201ENSMUST00000023468 2416 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Traf1P39428 Gm12367-202ENSMUST00000146909 2105 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Traf1P39428 Zfp133-ps-201ENSMUST00000119058 1802 ntBASIC11.77□□□□□ -0.52
Traf1P39428 Ifitm7-202ENSMUST00000178021 1823 ntAPPRIS ALT2 BASIC11.77□□□□□ -0.52
Traf1P39428 Igsf5-201ENSMUST00000000163 1851 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Traf1P39428 Gm37608-201ENSMUST00000195696 1880 ntBASIC11.77□□□□□ -0.53
Traf1P39428 N4bp2l1-205ENSMUST00000202031 1864 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Traf1P39428 Nup188-202ENSMUST00000113634 534 ntTSL 2 BASIC11.77□□□□□ -0.53
Traf1P39428 Shf-205ENSMUST00000121237 882 ntTSL 3 BASIC11.77□□□□□ -0.53
Traf1P39428 Gm11736-201ENSMUST00000121468 505 ntBASIC11.77□□□□□ -0.53
Traf1P39428 Gm14370-201ENSMUST00000122460 868 ntBASIC11.77□□□□□ -0.53
Traf1P39428 Gm11947-201ENSMUST00000125275 273 ntTSL 3 BASIC11.77□□□□□ -0.53
Traf1P39428 Gm15273-201ENSMUST00000142302 868 ntBASIC11.77□□□□□ -0.53
Traf1P39428 Gm7023-201ENSMUST00000147295 868 ntBASIC11.77□□□□□ -0.53
Traf1P39428 Gm14357-201ENSMUST00000178352 868 ntBASIC11.77□□□□□ -0.53
Traf1P39428 Gm14361-201ENSMUST00000178547 868 ntBASIC11.77□□□□□ -0.53
Traf1P39428 Gm14348-201ENSMUST00000179183 868 ntBASIC11.77□□□□□ -0.53
Traf1P39428 Gm35299-201ENSMUST00000195865 421 ntTSL 3 BASIC11.77□□□□□ -0.53
Traf1P39428 Fut1-202ENSMUST00000209379 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Traf1P39428 AC124752.1-201ENSMUST00000222131 776 ntTSL 5 BASIC11.77□□□□□ -0.53
Traf1P39428 AC161877.1-201ENSMUST00000227736 699 ntBASIC11.77□□□□□ -0.53
Traf1P39428 Pvalb-201ENSMUST00000005860 977 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Traf1P39428 Speer2-201ENSMUST00000076500 1118 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
Traf1P39428 Gm17644-201ENSMUST00000181272 3200 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Traf1P39428 Clcn6-205ENSMUST00000137724 5198 ntAPPRIS ALT1 TSL 5 BASIC11.77□□□□□ -0.53
Traf1P39428 P2ry1-202ENSMUST00000193201 3614 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Traf1P39428 Khdrbs2-204ENSMUST00000188257 5278 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Traf1P39428 Trappc9-202ENSMUST00000089770 4047 ntAPPRIS P4 TSL 1 (best) BASIC11.77□□□□□ -0.53
Traf1P39428 C1rl-201ENSMUST00000049124 3010 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Traf1P39428 Pcdhga10-201ENSMUST00000193404 4732 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Traf1P39428 Suclg2-204ENSMUST00000204224 3367 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Traf1P39428 Camk2b-210ENSMUST00000109815 3780 ntAPPRIS P2 TSL 5 BASIC11.77□□□□□ -0.53
Traf1P39428 AI606181-201ENSMUST00000099454 2796 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Traf1P39428 Elmo3-201ENSMUST00000109375 3189 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Traf1P39428 Gm43585-201ENSMUST00000199375 1403 ntBASIC11.77□□□□□ -0.53
Traf1P39428 Babam2-201ENSMUST00000063813 1410 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Traf1P39428 Itga10-201ENSMUST00000029744 5044 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Traf1P39428 Ly9-203ENSMUST00000111277 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Traf1P39428 Gpatch2-204ENSMUST00000110943 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Traf1P39428 Phtf1os-201ENSMUST00000160110 4046 ntBASIC11.76□□□□□ -0.53
Traf1P39428 Zbtb21-202ENSMUST00000063605 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Traf1P39428 Col5a2-201ENSMUST00000086430 6625 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Traf1P39428 Gm42879-201ENSMUST00000198656 2214 ntBASIC11.76□□□□□ -0.53
Traf1P39428 Akap3-203ENSMUST00000202878 3023 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Traf1P39428 Wbp1l-202ENSMUST00000111855 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Traf1P39428 Bco1-201ENSMUST00000034308 2338 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Traf1P39428 Pcdhga7-201ENSMUST00000192511 4730 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Traf1P39428 Pcdhgc5-201ENSMUST00000055935 4741 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Traf1P39428 Myo18a-208ENSMUST00000108375 7513 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Traf1P39428 Gpr19-201ENSMUST00000046255 1610 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Traf1P39428 Nek4-203ENSMUST00000226551 4098 ntAPPRIS ALT2 BASIC11.76□□□□□ -0.53
Traf1P39428 Zfp672-201ENSMUST00000057836 2862 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Traf1P39428 Prom2-202ENSMUST00000103214 4190 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Traf1P39428 Sept9-204ENSMUST00000106349 2932 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Traf1P39428 Hmbox1-201ENSMUST00000022544 3396 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Traf1P39428 Igll1-201ENSMUST00000100136 870 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Traf1P39428 Gm12470-201ENSMUST00000117239 1049 ntBASIC11.76□□□□□ -0.53
Traf1P39428 Gm8809-201ENSMUST00000119367 743 ntBASIC11.76□□□□□ -0.53
Traf1P39428 Gm12011-201ENSMUST00000119734 618 ntBASIC11.76□□□□□ -0.53
Traf1P39428 Gm12221-201ENSMUST00000125096 1131 ntBASIC11.76□□□□□ -0.53
Traf1P39428 Spata3-205ENSMUST00000130504 1100 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Traf1P39428 Gm17107-201ENSMUST00000170983 553 ntBASIC11.76□□□□□ -0.53
Traf1P39428 Gm26532-201ENSMUST00000180630 690 ntBASIC11.76□□□□□ -0.53
Traf1P39428 Vmn1r206-201ENSMUST00000187140 1135 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Traf1P39428 Gm38191-201ENSMUST00000194509 770 ntTSL 5 BASIC11.76□□□□□ -0.53
Traf1P39428 Gm43450-201ENSMUST00000202611 632 ntTSL 3 BASIC11.76□□□□□ -0.53
Traf1P39428 Pf4-203ENSMUST00000202625 411 ntTSL 2 BASIC11.76□□□□□ -0.53
Traf1P39428 2210039B01Rik-201ENSMUST00000222490 1044 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Traf1P39428 Cxcl3-201ENSMUST00000031326 1016 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Traf1P39428 Cxcl10-201ENSMUST00000038816 1094 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Traf1P39428 Myl10-201ENSMUST00000005611 688 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Traf1P39428 Srp19-201ENSMUST00000072576 876 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Traf1P39428 Vmn1r199-201ENSMUST00000091732 1104 ntAPPRIS P2 BASIC11.76□□□□□ -0.53
Traf1P39428 Esp6-201ENSMUST00000097324 658 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Traf1P39428 Gm42826-201ENSMUST00000197548 2639 ntBASIC11.76□□□□□ -0.53
Traf1P39428 Vwce-201ENSMUST00000055115 3540 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Traf1P39428 Upk1b-201ENSMUST00000057767 1769 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Traf1P39428 Rrp8-202ENSMUST00000098148 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Traf1P39428 Gm44510-201ENSMUST00000206288 4532 ntBASIC11.76□□□□□ -0.53
Traf1P39428 4632418H02Rik-201ENSMUST00000217287 2721 ntBASIC11.76□□□□□ -0.53
Traf1P39428 Sfmbt2-202ENSMUST00000114861 1813 ntTSL 5 BASIC11.76□□□□□ -0.53
Traf1P39428 Rbm3-201ENSMUST00000040010 2792 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Traf1P39428 4930578C19Rik-201ENSMUST00000044188 1896 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Traf1P39428 Zfp474-201ENSMUST00000072666 1930 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Traf1P39428 Bfar-201ENSMUST00000023365 3003 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Traf1P39428 Eloc-208ENSMUST00000188641 2014 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Traf1P39428 Spata7-202ENSMUST00000101144 1541 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Traf1P39428 Ribc1-201ENSMUST00000026288 1508 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Traf1P39428 Gm11131-201ENSMUST00000113886 3122 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 97.5 ms