Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm23521-201ENSMUST00000177845 110 ntBASIC11.82□□□□□ -0.52
Traf1P39428 Mir6973a-201ENSMUST00000183646 78 ntBASIC11.82□□□□□ -0.52
Traf1P39428 Gm29617-201ENSMUST00000185730 610 ntBASIC11.82□□□□□ -0.52
Traf1P39428 E330020D12Rik-203ENSMUST00000188717 766 ntTSL 2 BASIC11.82□□□□□ -0.52
Traf1P39428 Gm2316-201ENSMUST00000190613 921 ntBASIC11.82□□□□□ -0.52
Traf1P39428 1700019D03Rik-205ENSMUST00000190726 702 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Traf1P39428 Gm37009-201ENSMUST00000193297 361 ntBASIC11.82□□□□□ -0.52
Traf1P39428 Rpl13-ps4-201ENSMUST00000194776 628 ntBASIC11.82□□□□□ -0.52
Traf1P39428 Gm9771-201ENSMUST00000198267 1137 ntBASIC11.82□□□□□ -0.52
Traf1P39428 Gm32772-203ENSMUST00000207022 675 ntTSL 3 BASIC11.82□□□□□ -0.52
Traf1P39428 Lysmd4-203ENSMUST00000207757 631 ntAPPRIS ALT2 TSL 3 BASIC11.82□□□□□ -0.52
Traf1P39428 Gm44908-201ENSMUST00000208610 266 ntBASIC11.82□□□□□ -0.52
Traf1P39428 Olfr1335-202ENSMUST00000219094 1148 ntAPPRIS P2 BASIC11.82□□□□□ -0.52
Traf1P39428 AC124356.1-201ENSMUST00000221469 698 ntBASIC11.82□□□□□ -0.52
Traf1P39428 AC134439.3-201ENSMUST00000223486 851 ntTSL 5 BASIC11.82□□□□□ -0.52
Traf1P39428 AC242269.1-201ENSMUST00000227020 741 ntBASIC11.82□□□□□ -0.52
Traf1P39428 AC163646.3-202ENSMUST00000228685 691 ntBASIC11.82□□□□□ -0.52
Traf1P39428 Tbc1d21-201ENSMUST00000040217 1283 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Traf1P39428 Olfr1335-201ENSMUST00000084313 1148 ntAPPRIS ALT2 BASIC11.82□□□□□ -0.52
Traf1P39428 Cdkal1-202ENSMUST00000091674 2427 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Traf1P39428 Gm21817-201ENSMUST00000178584 2583 ntBASIC11.82□□□□□ -0.52
Traf1P39428 Cd177-201ENSMUST00000063956 2714 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Traf1P39428 Trpc5-201ENSMUST00000040184 4158 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Traf1P39428 Nit1-201ENSMUST00000111289 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Traf1P39428 Slc5a9-201ENSMUST00000102719 2460 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Traf1P39428 Anapc15-213ENSMUST00000178851 2797 ntTSL 2 BASIC11.82□□□□□ -0.52
Traf1P39428 Rims2-204ENSMUST00000226410 3685 ntBASIC11.82□□□□□ -0.52
Traf1P39428 Gm19040-201ENSMUST00000203280 4726 ntBASIC11.82□□□□□ -0.52
Traf1P39428 Ttll2-201ENSMUST00000115747 1623 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Traf1P39428 9430064I24Rik-201ENSMUST00000206516 2669 ntBASIC11.82□□□□□ -0.52
Traf1P39428 Aoc1-201ENSMUST00000031835 2675 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Traf1P39428 Map2-206ENSMUST00000114017 4981 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Traf1P39428 5730460C07Rik-201ENSMUST00000081193 1834 ntTSL 2 BASIC11.81□□□□□ -0.52
Traf1P39428 Papln-201ENSMUST00000021646 4260 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Traf1P39428 Fam198b-202ENSMUST00000118853 6729 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Traf1P39428 Gm42450-201ENSMUST00000199286 2644 ntTSL 5 BASIC11.81□□□□□ -0.52
Traf1P39428 Tia1-201ENSMUST00000095752 3130 ntAPPRIS ALT1 TSL 5 BASIC11.81□□□□□ -0.52
Traf1P39428 Rffl-201ENSMUST00000021036 1719 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Traf1P39428 Rbp1-201ENSMUST00000052068 2652 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Traf1P39428 Fopnl-202ENSMUST00000120707 1414 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Traf1P39428 Arg2-201ENSMUST00000021550 1428 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Traf1P39428 Prc1-202ENSMUST00000163812 3026 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Traf1P39428 Gm13002-201ENSMUST00000119286 682 ntBASIC11.81□□□□□ -0.52
Traf1P39428 Gm14633-201ENSMUST00000121152 470 ntBASIC11.81□□□□□ -0.52
Traf1P39428 6430531B16Rik-202ENSMUST00000121412 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Traf1P39428 Gm14145-201ENSMUST00000133385 508 ntTSL 3 BASIC11.81□□□□□ -0.52
Traf1P39428 Gm13778-202ENSMUST00000146633 537 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Traf1P39428 Gm14146-201ENSMUST00000155885 508 ntTSL 5 BASIC11.81□□□□□ -0.52
Traf1P39428 Gm25394-201ENSMUST00000157338 133 ntBASIC11.81□□□□□ -0.52
Traf1P39428 Gm20821-202ENSMUST00000180352 684 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
Traf1P39428 Gm6967-201ENSMUST00000182599 1007 ntBASIC11.81□□□□□ -0.52
Traf1P39428 Zfp572-201ENSMUST00000183674 1098 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Traf1P39428 Pik3r4-206ENSMUST00000188784 1295 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Traf1P39428 4930444A19Rik-202ENSMUST00000190007 633 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Traf1P39428 1700019D03Rik-206ENSMUST00000190831 653 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
Traf1P39428 Gm37851-201ENSMUST00000193871 889 ntBASIC11.81□□□□□ -0.52
Traf1P39428 Cox7a1-202ENSMUST00000208441 485 ntTSL 2 BASIC11.81□□□□□ -0.52
Traf1P39428 Gm5040-201ENSMUST00000218609 800 ntBASIC11.81□□□□□ -0.52
Traf1P39428 AC159282.1-204ENSMUST00000219472 780 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Traf1P39428 Gm18119-201ENSMUST00000219972 616 ntBASIC11.81□□□□□ -0.52
Traf1P39428 Gm18749-201ENSMUST00000222410 692 ntBASIC11.81□□□□□ -0.52
Traf1P39428 Gm26205-201ENSMUST00000082907 134 ntBASIC11.81□□□□□ -0.52
Traf1P39428 Gm8618-201ENSMUST00000097570 432 ntBASIC11.81□□□□□ -0.52
Traf1P39428 Kif2a-206ENSMUST00000159772 2570 ntTSL 5 BASIC11.81□□□□□ -0.52
Traf1P39428 Polh-201ENSMUST00000024749 2569 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Traf1P39428 Rad50-201ENSMUST00000020649 5153 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Traf1P39428 Nprl3-202ENSMUST00000109389 1642 ntAPPRIS ALT1 TSL 5 BASIC11.81□□□□□ -0.52
Traf1P39428 Rpap2-201ENSMUST00000065422 2268 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Traf1P39428 Stau2-216ENSMUST00000162627 2773 ntTSL 5 BASIC11.81□□□□□ -0.52
Traf1P39428 Ube2l3-201ENSMUST00000090192 2609 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Traf1P39428 Gm13857-203ENSMUST00000150561 2337 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Traf1P39428 AI854703-202ENSMUST00000154570 3806 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
Traf1P39428 Lpxn-201ENSMUST00000025601 1675 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Traf1P39428 Gpm6b-207ENSMUST00000112229 3203 ntAPPRIS ALT1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Traf1P39428 AC153524.2-201ENSMUST00000218351 1375 ntTSL 5 BASIC11.8□□□□□ -0.52
Traf1P39428 Syt15-201ENSMUST00000035351 3623 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
Traf1P39428 A130071D04Rik-201ENSMUST00000194467 5864 ntBASIC11.8□□□□□ -0.52
Traf1P39428 Wars-205ENSMUST00000161410 2764 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Traf1P39428 Eno2-201ENSMUST00000004378 2795 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Traf1P39428 Zfp384-201ENSMUST00000046064 3108 ntTSL 5 BASIC11.8□□□□□ -0.52
Traf1P39428 Phip-201ENSMUST00000034787 10756 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Traf1P39428 Gm16982-201ENSMUST00000181275 2620 ntTSL 2 BASIC11.8□□□□□ -0.52
Traf1P39428 Stard4-201ENSMUST00000025236 5097 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Traf1P39428 Cux1-207ENSMUST00000176216 2821 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Traf1P39428 Gm26574-201ENSMUST00000181876 2141 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Traf1P39428 Slc19a1-208ENSMUST00000136925 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Traf1P39428 Smyd1-202ENSMUST00000114186 3292 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Traf1P39428 1700064H15Rik-201ENSMUST00000119133 394 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Traf1P39428 Gm15489-201ENSMUST00000132811 973 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Traf1P39428 Gm13780-201ENSMUST00000150482 1187 ntTSL 5 BASIC11.8□□□□□ -0.52
Traf1P39428 1700001J04Rik-202ENSMUST00000154037 743 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Traf1P39428 Gm7833-201ENSMUST00000183288 990 ntBASIC11.8□□□□□ -0.52
Traf1P39428 Med11-201ENSMUST00000019067 902 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Traf1P39428 Gm18894-201ENSMUST00000198794 694 ntBASIC11.8□□□□□ -0.52
Traf1P39428 Ckb-ps2-201ENSMUST00000198886 1001 ntBASIC11.8□□□□□ -0.52
Traf1P39428 Sult2b1-207ENSMUST00000210754 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Traf1P39428 Gm45783-201ENSMUST00000210877 656 ntAPPRIS P1 TSL 3 BASIC11.8□□□□□ -0.52
Traf1P39428 AC154433.1-201ENSMUST00000224401 1183 ntBASIC11.8□□□□□ -0.52
Traf1P39428 Sh2d6-201ENSMUST00000089687 1162 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Traf1P39428 Cspp1-201ENSMUST00000071087 4355 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 57.8 ms