Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Mok-204ENSMUST00000177224 551 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Traf1P39428 Gm37921-201ENSMUST00000194333 695 ntBASIC11.84□□□□□ -0.51
Traf1P39428 Tpd52l1-204ENSMUST00000214644 1103 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Traf1P39428 AC156274.1-201ENSMUST00000219193 634 ntBASIC11.84□□□□□ -0.51
Traf1P39428 Myh11-201ENSMUST00000090287 6632 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Traf1P39428 4732487G21Rik-201ENSMUST00000181495 2664 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Traf1P39428 Xaf1-204ENSMUST00000146233 2597 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Traf1P39428 Gm29773-201ENSMUST00000212751 1895 ntTSL 2 BASIC11.84□□□□□ -0.51
Traf1P39428 St5-203ENSMUST00000084738 3161 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Traf1P39428 Cntrl-201ENSMUST00000028235 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Traf1P39428 Atp6v0a4-202ENSMUST00000114908 3307 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Traf1P39428 Gm5174-201ENSMUST00000171131 1423 ntBASIC11.84□□□□□ -0.51
Traf1P39428 Spert-201ENSMUST00000035243 1430 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Traf1P39428 Ccdc62-202ENSMUST00000165148 3920 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Traf1P39428 Gm4880-201ENSMUST00000207645 1696 ntBASIC11.84□□□□□ -0.51
Traf1P39428 Tulp2-210ENSMUST00000210868 1664 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Traf1P39428 Fbxo40-202ENSMUST00000114806 2518 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Traf1P39428 Chst15-202ENSMUST00000080215 4813 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Traf1P39428 Zcchc12-202ENSMUST00000115256 2197 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
Traf1P39428 AC144938.1-201ENSMUST00000223994 2167 ntBASIC11.84□□□□□ -0.51
Traf1P39428 Bgn-207ENSMUST00000169489 1574 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
Traf1P39428 Gpr39-201ENSMUST00000027581 2691 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
Traf1P39428 Slx1b-203ENSMUST00000144897 3152 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
Traf1P39428 Scn8a-201ENSMUST00000082209 11293 ntAPPRIS ALT1 TSL 5 BASIC11.83□□□□□ -0.52
Traf1P39428 Gm37516-201ENSMUST00000192593 1954 ntBASIC11.83□□□□□ -0.52
Traf1P39428 Hsdl1-204ENSMUST00000212517 2215 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Traf1P39428 6430562O15Rik-201ENSMUST00000180491 2488 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Traf1P39428 Bod1l-201ENSMUST00000050556 10540 ntAPPRIS P3 TSL 5 BASIC11.83□□□□□ -0.52
Traf1P39428 Arhgef10-202ENSMUST00000110800 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Traf1P39428 Fam184b-201ENSMUST00000016023 4236 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Traf1P39428 Mapk1ip1-202ENSMUST00000118810 1350 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Traf1P39428 Qars-203ENSMUST00000134939 2374 ntTSL 5 BASIC11.83□□□□□ -0.52
Traf1P39428 Gm43307-201ENSMUST00000199465 2371 ntBASIC11.83□□□□□ -0.52
Traf1P39428 Klk1b5-201ENSMUST00000074359 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Traf1P39428 Slc6a2-201ENSMUST00000072939 6187 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Traf1P39428 2410004P03Rik-201ENSMUST00000095823 3437 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Traf1P39428 Afap1-201ENSMUST00000064571 6618 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Traf1P39428 Spaca3-201ENSMUST00000103222 831 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Traf1P39428 Trav13-2-201ENSMUST00000103658 390 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
Traf1P39428 Gm6630-201ENSMUST00000119199 454 ntBASIC11.83□□□□□ -0.52
Traf1P39428 Gm15285-201ENSMUST00000119271 473 ntBASIC11.83□□□□□ -0.52
Traf1P39428 Gm13660-201ENSMUST00000142828 722 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Traf1P39428 Gm8464-202ENSMUST00000146697 1142 ntBASIC11.83□□□□□ -0.52
Traf1P39428 Gm15943-201ENSMUST00000147638 3821 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Traf1P39428 Gm14817-201ENSMUST00000148522 643 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Traf1P39428 Gm4750-201ENSMUST00000151942 1142 ntBASIC11.83□□□□□ -0.52
Traf1P39428 Gm11915-201ENSMUST00000153669 358 ntTSL 5 BASIC11.83□□□□□ -0.52
Traf1P39428 Pttg1ip-208ENSMUST00000162943 721 ntAPPRIS ALT2 TSL 3 BASIC11.83□□□□□ -0.52
Traf1P39428 Gm5501-201ENSMUST00000165917 832 ntBASIC11.83□□□□□ -0.52
Traf1P39428 Gm3298-202ENSMUST00000172110 615 ntTSL 5 BASIC11.83□□□□□ -0.52
Traf1P39428 Gm7672-201ENSMUST00000180915 872 ntBASIC11.83□□□□□ -0.52
Traf1P39428 Gm6773-201ENSMUST00000182377 878 ntBASIC11.83□□□□□ -0.52
Traf1P39428 Gm29487-201ENSMUST00000190146 256 ntBASIC11.83□□□□□ -0.52
Traf1P39428 Nps-202ENSMUST00000210697 1082 ntTSL 5 BASIC11.83□□□□□ -0.52
Traf1P39428 Gm13539-202ENSMUST00000211245 552 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Traf1P39428 Gm32098-201ENSMUST00000211305 479 ntTSL 5 BASIC11.83□□□□□ -0.52
Traf1P39428 Gm5905-201ENSMUST00000211731 580 ntBASIC11.83□□□□□ -0.52
Traf1P39428 Gm6353-201ENSMUST00000223234 1051 ntBASIC11.83□□□□□ -0.52
Traf1P39428 AC165260.2-201ENSMUST00000225371 395 ntBASIC11.83□□□□□ -0.52
Traf1P39428 Speer4f1-201ENSMUST00000076099 1256 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Traf1P39428 Inpp5b-201ENSMUST00000094782 3809 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Traf1P39428 Nup50-201ENSMUST00000165443 4741 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Traf1P39428 Mkrn1-204ENSMUST00000114823 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Traf1P39428 Mtfr1-204ENSMUST00000130645 2953 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Traf1P39428 Champ1-201ENSMUST00000051870 4013 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Traf1P39428 Pml-202ENSMUST00000114136 4343 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Traf1P39428 Pgf-201ENSMUST00000004913 1582 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Traf1P39428 Mcm3-201ENSMUST00000053266 3031 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Traf1P39428 Ddr1-201ENSMUST00000003628 3802 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Traf1P39428 Cfap74-204ENSMUST00000123952 2365 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Traf1P39428 Bahcc1-203ENSMUST00000122148 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Traf1P39428 Cd247-202ENSMUST00000027849 1317 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Traf1P39428 Btn2a2-204ENSMUST00000223877 2109 ntAPPRIS ALT2 BASIC11.83□□□□□ -0.52
Traf1P39428 Ccdc85a-206ENSMUST00000146385 3798 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Traf1P39428 Gm29222-201ENSMUST00000185442 2167 ntTSL 5 BASIC11.82□□□□□ -0.52
Traf1P39428 Gm29449-201ENSMUST00000187820 2168 ntTSL 5 BASIC11.82□□□□□ -0.52
Traf1P39428 Gm28104-201ENSMUST00000188331 2168 ntTSL 5 BASIC11.82□□□□□ -0.52
Traf1P39428 Gm28743-201ENSMUST00000189014 2168 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Traf1P39428 Gm29384-201ENSMUST00000190852 2168 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Traf1P39428 Gm37538-201ENSMUST00000192417 2168 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Traf1P39428 Dusp11-201ENSMUST00000032071 6435 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Traf1P39428 Casp14-201ENSMUST00000005488 2336 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Traf1P39428 Cage1-203ENSMUST00000110233 2875 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Traf1P39428 Kyat1-203ENSMUST00000113660 1388 ntTSL 5 BASIC11.82□□□□□ -0.52
Traf1P39428 Pask-201ENSMUST00000027493 5779 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Traf1P39428 Ovgp1-201ENSMUST00000000573 2616 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Traf1P39428 Tbc1d31-201ENSMUST00000022992 3311 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Traf1P39428 Ampd3-206ENSMUST00000170374 3489 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Traf1P39428 Iqce-201ENSMUST00000041783 6037 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Traf1P39428 Ampd2-203ENSMUST00000102638 3650 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Traf1P39428 Synpo2l-203ENSMUST00000119483 3696 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Traf1P39428 Atp9b-201ENSMUST00000091790 5357 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Traf1P39428 1810058I24Rik-201ENSMUST00000130875 690 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Traf1P39428 Fyn-205ENSMUST00000135242 2114 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Traf1P39428 Gm16305-201ENSMUST00000140747 556 ntBASIC11.82□□□□□ -0.52
Traf1P39428 Ube4bos3-201ENSMUST00000155845 756 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Traf1P39428 Gm17207-201ENSMUST00000168686 645 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Traf1P39428 Slc22a14-204ENSMUST00000170400 2110 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Traf1P39428 Vmn2r-ps9-201ENSMUST00000177446 1099 ntBASIC11.82□□□□□ -0.52
Traf1P39428 Igkv4-54-201ENSMUST00000177697 288 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 39.6 ms