Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Palld-201ENSMUST00000034057 3566 ntAPPRIS P3 TSL 5 BASIC8.32□□□□□ -1.08
Hmgb3O54879 Bglap3-203ENSMUST00000107543 1047 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
Hmgb3O54879 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC8.32□□□□□ -1.08
Hmgb3O54879 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC8.32□□□□□ -1.08
Hmgb3O54879 Cat-202ENSMUST00000111168 779 ntTSL 3 BASIC8.32□□□□□ -1.08
Hmgb3O54879 Gm14028-201ENSMUST00000117434 479 ntBASIC8.32□□□□□ -1.08
Hmgb3O54879 Gm12194-201ENSMUST00000117756 1012 ntBASIC8.32□□□□□ -1.08
Hmgb3O54879 Gm15573-201ENSMUST00000119487 540 ntBASIC8.32□□□□□ -1.08
Hmgb3O54879 Gm14017-201ENSMUST00000121934 386 ntBASIC8.32□□□□□ -1.08
Hmgb3O54879 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC8.32□□□□□ -1.08
Hmgb3O54879 Bcas3os2-201ENSMUST00000134305 661 ntTSL 5 BASIC8.32□□□□□ -1.08
Hmgb3O54879 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC8.32□□□□□ -1.08
Hmgb3O54879 Gm12951-201ENSMUST00000150216 434 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
Hmgb3O54879 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
Hmgb3O54879 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
Hmgb3O54879 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC8.32□□□□□ -1.08
Hmgb3O54879 Ccr6-204ENSMUST00000167956 1219 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
Hmgb3O54879 Gm20662-201ENSMUST00000176356 601 ntAPPRIS P5 TSL 3 BASIC8.32□□□□□ -1.08
Hmgb3O54879 Gm27341-201ENSMUST00000183570 106 ntBASIC8.32□□□□□ -1.08
Hmgb3O54879 Gm28375-201ENSMUST00000185304 430 ntTSL 3 BASIC8.32□□□□□ -1.08
Hmgb3O54879 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
Hmgb3O54879 Gm29135-201ENSMUST00000188411 612 ntTSL 5 BASIC8.32□□□□□ -1.08
Hmgb3O54879 4930402C01Rik-201ENSMUST00000192586 663 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
Hmgb3O54879 Gm43163-201ENSMUST00000196571 442 ntBASIC8.32□□□□□ -1.08
Hmgb3O54879 Gm19566-201ENSMUST00000199576 610 ntBASIC8.32□□□□□ -1.08
Hmgb3O54879 Gm7848-201ENSMUST00000210739 718 ntBASIC8.32□□□□□ -1.08
Hmgb3O54879 AC134248.1-201ENSMUST00000216113 1176 ntBASIC8.32□□□□□ -1.08
Hmgb3O54879 Gm19990-201ENSMUST00000219468 1224 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
Hmgb3O54879 AC154171.1-201ENSMUST00000224610 643 ntBASIC8.32□□□□□ -1.08
Hmgb3O54879 AC133499.1-201ENSMUST00000227778 1097 ntAPPRIS P1 BASIC8.32□□□□□ -1.08
Hmgb3O54879 AC122350.1-201ENSMUST00000228135 533 ntBASIC8.32□□□□□ -1.08
Hmgb3O54879 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC8.32□□□□□ -1.08
Hmgb3O54879 Gm10263-201ENSMUST00000085163 300 ntBASIC8.32□□□□□ -1.08
Hmgb3O54879 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
Hmgb3O54879 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC8.32□□□□□ -1.08
Hmgb3O54879 Nutf2-ps1-201ENSMUST00000095978 864 ntAPPRIS P1 BASIC8.32□□□□□ -1.08
Hmgb3O54879 Dock5-201ENSMUST00000039135 9988 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
Hmgb3O54879 Cish-201ENSMUST00000085102 2850 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
Hmgb3O54879 Add2-210ENSMUST00000205034 3266 ntAPPRIS ALT2 TSL 1 (best) BASIC8.32□□□□□ -1.08
Hmgb3O54879 Cntnap4-202ENSMUST00000118171 4860 ntAPPRIS ALT1 TSL 5 BASIC8.32□□□□□ -1.08
Hmgb3O54879 Grb2-204ENSMUST00000106499 2333 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
Hmgb3O54879 AC117245.3-201ENSMUST00000217495 2176 ntBASIC8.32□□□□□ -1.08
Hmgb3O54879 Ankrd36-201ENSMUST00000109855 1363 ntAPPRIS ALT2 TSL 1 (best) BASIC8.32□□□□□ -1.08
Hmgb3O54879 Zfp469-202ENSMUST00000187142 3082 ntBASIC8.32□□□□□ -1.08
Hmgb3O54879 Duxbl1-201ENSMUST00000049793 2266 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
Hmgb3O54879 Ick-204ENSMUST00000118869 2540 ntAPPRIS P2 TSL 1 (best) BASIC8.32□□□□□ -1.08
Hmgb3O54879 Tlk2-203ENSMUST00000106939 5494 ntAPPRIS P3 TSL 1 (best) BASIC8.32□□□□□ -1.08
Hmgb3O54879 Gm15448-204ENSMUST00000153846 2145 ntAPPRIS P5 TSL 5 BASIC8.32□□□□□ -1.08
Hmgb3O54879 Frem1-201ENSMUST00000071708 9307 ntAPPRIS P3 TSL 1 (best) BASIC8.32□□□□□ -1.08
Hmgb3O54879 Cdkl5-201ENSMUST00000087104 3269 ntAPPRIS P2 TSL 1 (best) BASIC8.32□□□□□ -1.08
Hmgb3O54879 Urod-201ENSMUST00000030446 1489 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
Hmgb3O54879 Gm17249-201ENSMUST00000181277 3500 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
Hmgb3O54879 Cd300lg-202ENSMUST00000107163 2605 ntAPPRIS ALT2 TSL 1 (best) BASIC8.32□□□□□ -1.08
Hmgb3O54879 Foxm1-202ENSMUST00000112148 2229 ntAPPRIS ALT2 TSL 5 BASIC8.31□□□□□ -1.08
Hmgb3O54879 Alkbh1-209ENSMUST00000162961 3857 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
Hmgb3O54879 Gsdma2-201ENSMUST00000017355 1314 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
Hmgb3O54879 Adgrf4-201ENSMUST00000024711 3060 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
Hmgb3O54879 Cald1-204ENSMUST00000115026 4080 ntTSL 5 BASIC8.31□□□□□ -1.08
Hmgb3O54879 D930048N14Rik-201ENSMUST00000064493 3426 ntAPPRIS P5 TSL 1 (best) BASIC8.31□□□□□ -1.08
Hmgb3O54879 Gm43764-201ENSMUST00000202553 3172 ntBASIC8.31□□□□□ -1.08
Hmgb3O54879 AC154849.3-201ENSMUST00000223733 1660 ntBASIC8.31□□□□□ -1.08
Hmgb3O54879 Tubb1-201ENSMUST00000016399 1406 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
Hmgb3O54879 Nr1i3-201ENSMUST00000005820 1414 ntAPPRIS P3 TSL 1 (best) BASIC8.31□□□□□ -1.08
Hmgb3O54879 Gm15601-201ENSMUST00000122972 4033 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
Hmgb3O54879 Ttc37-201ENSMUST00000091466 5381 ntAPPRIS P1 TSL 5 BASIC8.31□□□□□ -1.08
Hmgb3O54879 Ophn1-202ENSMUST00000113826 2794 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
Hmgb3O54879 Acp1-202ENSMUST00000074038 2754 ntAPPRIS ALT1 TSL 1 (best) BASIC8.31□□□□□ -1.08
Hmgb3O54879 Ppp6c-201ENSMUST00000028087 4115 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
Hmgb3O54879 Arhgap26-216ENSMUST00000155576 2280 ntAPPRIS ALT1 TSL 5 BASIC8.31□□□□□ -1.08
Hmgb3O54879 Epn2-213ENSMUST00000179936 4452 ntAPPRIS ALT2 TSL 1 (best) BASIC8.31□□□□□ -1.08
Hmgb3O54879 Ftsj3-201ENSMUST00000021048 3144 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
Hmgb3O54879 Zswim9-202ENSMUST00000119139 3986 ntAPPRIS P5 TSL 1 (best) BASIC8.31□□□□□ -1.08
Hmgb3O54879 Ighv1-12-201ENSMUST00000103500 294 ntAPPRIS P1 BASIC8.31□□□□□ -1.08
Hmgb3O54879 Nudt6-203ENSMUST00000108117 879 ntTSL 5 BASIC8.31□□□□□ -1.08
Hmgb3O54879 Ccdc32-203ENSMUST00000110834 828 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
Hmgb3O54879 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC8.31□□□□□ -1.08
Hmgb3O54879 AA387200-201ENSMUST00000147463 1177 ntTSL 3 BASIC8.31□□□□□ -1.08
Hmgb3O54879 Gm22876-201ENSMUST00000175450 298 ntBASIC8.31□□□□□ -1.08
Hmgb3O54879 AU020206-201ENSMUST00000181224 656 ntTSL 2 BASIC8.31□□□□□ -1.08
Hmgb3O54879 Gm37976-201ENSMUST00000193827 345 ntBASIC8.31□□□□□ -1.08
Hmgb3O54879 Myo1h-206ENSMUST00000196467 1208 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
Hmgb3O54879 4930573C15Rik-201ENSMUST00000197707 777 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
Hmgb3O54879 Ube2d3-216ENSMUST00000199613 738 ntAPPRIS P2 TSL 3 BASIC8.31□□□□□ -1.08
Hmgb3O54879 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC8.31□□□□□ -1.08
Hmgb3O54879 Myl6-203ENSMUST00000217776 562 ntTSL 3 BASIC8.31□□□□□ -1.08
Hmgb3O54879 Gm7172-201ENSMUST00000218047 1152 ntBASIC8.31□□□□□ -1.08
Hmgb3O54879 Olfr456-201ENSMUST00000057251 1052 ntAPPRIS P1 BASIC8.31□□□□□ -1.08
Hmgb3O54879 Naca-201ENSMUST00000073868 885 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
Hmgb3O54879 Acyp1-201ENSMUST00000008966 648 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
Hmgb3O54879 Ablim1-206ENSMUST00000111528 2481 ntTSL 5 BASIC8.31□□□□□ -1.08
Hmgb3O54879 Ddx6-201ENSMUST00000170489 6065 ntAPPRIS P1 TSL 5 BASIC8.31□□□□□ -1.08
Hmgb3O54879 Gm43412-201ENSMUST00000197455 2818 ntBASIC8.31□□□□□ -1.08
Hmgb3O54879 B3gat1-205ENSMUST00000161115 3426 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
Hmgb3O54879 Pstpip2-201ENSMUST00000114741 1395 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
Hmgb3O54879 Deptor-202ENSMUST00000096433 8547 ntAPPRIS P4 TSL 1 (best) BASIC8.31□□□□□ -1.08
Hmgb3O54879 Nin-211ENSMUST00000222237 9919 ntAPPRIS P4 TSL 5 BASIC8.31□□□□□ -1.08
Hmgb3O54879 Sez6l2-202ENSMUST00000106333 3595 ntAPPRIS P3 TSL 1 (best) BASIC8.31□□□□□ -1.08
Hmgb3O54879 Nt5c1b-203ENSMUST00000143739 1570 ntTSL 2 BASIC8.31□□□□□ -1.08
Hmgb3O54879 Prpf4b-201ENSMUST00000077853 7844 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
Hmgb3O54879 Gm45170-201ENSMUST00000206746 1671 ntBASIC8.3□□□□□ -1.08
Retrieved 100 of 76,532 protein–RNA pairs in 110.8 ms