Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cdc40Q9DC48 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cdc40Q9DC48 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Cdc40Q9DC48 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Cdc40Q9DC48 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Cdc40Q9DC48 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Cdc40Q9DC48 Flvcr1-202ENSMUST00000191946 1216 ntBASIC18.24■□□□□ 0.51
Cdc40Q9DC48 Gm2011-201ENSMUST00000203124 1263 ntBASIC18.24■□□□□ 0.51
Cdc40Q9DC48 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Cdc40Q9DC48 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Cdc40Q9DC48 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Cdc40Q9DC48 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Cdc40Q9DC48 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Cdc40Q9DC48 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Cdc40Q9DC48 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC18.23■□□□□ 0.51
Cdc40Q9DC48 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Cdc40Q9DC48 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Cdc40Q9DC48 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC18.23■□□□□ 0.51
Cdc40Q9DC48 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC18.23■□□□□ 0.51
Cdc40Q9DC48 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC18.23■□□□□ 0.51
Cdc40Q9DC48 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Cdc40Q9DC48 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Cdc40Q9DC48 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Cdc40Q9DC48 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
Cdc40Q9DC48 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Cdc40Q9DC48 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC18.23■□□□□ 0.51
Cdc40Q9DC48 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC18.23■□□□□ 0.51
Cdc40Q9DC48 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Cdc40Q9DC48 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Cdc40Q9DC48 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Cdc40Q9DC48 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Cdc40Q9DC48 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
Cdc40Q9DC48 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC18.23■□□□□ 0.51
Cdc40Q9DC48 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Cdc40Q9DC48 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Cdc40Q9DC48 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Cdc40Q9DC48 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Cdc40Q9DC48 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Cdc40Q9DC48 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Cdc40Q9DC48 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Cdc40Q9DC48 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Cdc40Q9DC48 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Cdc40Q9DC48 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Cdc40Q9DC48 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Cdc40Q9DC48 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Cdc40Q9DC48 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Cdc40Q9DC48 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Cdc40Q9DC48 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Cdc40Q9DC48 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Cdc40Q9DC48 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Cdc40Q9DC48 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Cdc40Q9DC48 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Cdc40Q9DC48 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
Cdc40Q9DC48 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Cdc40Q9DC48 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Cdc40Q9DC48 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC18.21■□□□□ 0.51
Cdc40Q9DC48 Gm21168-201ENSMUST00000199646 1096 ntBASIC18.21■□□□□ 0.51
Cdc40Q9DC48 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Cdc40Q9DC48 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC18.21■□□□□ 0.51
Cdc40Q9DC48 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Cdc40Q9DC48 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Cdc40Q9DC48 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Cdc40Q9DC48 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Cdc40Q9DC48 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC18.2■□□□□ 0.5
Cdc40Q9DC48 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Cdc40Q9DC48 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Cdc40Q9DC48 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Cdc40Q9DC48 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC18.2■□□□□ 0.5
Cdc40Q9DC48 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
Cdc40Q9DC48 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Cdc40Q9DC48 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Cdc40Q9DC48 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Cdc40Q9DC48 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cdc40Q9DC48 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cdc40Q9DC48 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Cdc40Q9DC48 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cdc40Q9DC48 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Cdc40Q9DC48 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Cdc40Q9DC48 Wdr70-203ENSMUST00000227371 1130 ntBASIC18.19■□□□□ 0.5
Cdc40Q9DC48 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Cdc40Q9DC48 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cdc40Q9DC48 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Cdc40Q9DC48 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Cdc40Q9DC48 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Cdc40Q9DC48 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Cdc40Q9DC48 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdc40Q9DC48 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdc40Q9DC48 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdc40Q9DC48 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdc40Q9DC48 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
Cdc40Q9DC48 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Cdc40Q9DC48 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdc40Q9DC48 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
Cdc40Q9DC48 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdc40Q9DC48 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdc40Q9DC48 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdc40Q9DC48 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC18.18■□□□□ 0.5
Cdc40Q9DC48 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdc40Q9DC48 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Cdc40Q9DC48 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms