Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trub1Q8C0D0 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC20.4■□□□□ 0.86
Trub1Q8C0D0 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trub1Q8C0D0 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
Trub1Q8C0D0 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trub1Q8C0D0 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trub1Q8C0D0 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trub1Q8C0D0 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Trub1Q8C0D0 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trub1Q8C0D0 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trub1Q8C0D0 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trub1Q8C0D0 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trub1Q8C0D0 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trub1Q8C0D0 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
Trub1Q8C0D0 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trub1Q8C0D0 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC20.38■□□□□ 0.85
Trub1Q8C0D0 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trub1Q8C0D0 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
Trub1Q8C0D0 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trub1Q8C0D0 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trub1Q8C0D0 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trub1Q8C0D0 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC20.38■□□□□ 0.85
Trub1Q8C0D0 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trub1Q8C0D0 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trub1Q8C0D0 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trub1Q8C0D0 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Trub1Q8C0D0 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trub1Q8C0D0 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trub1Q8C0D0 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Trub1Q8C0D0 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Trub1Q8C0D0 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Trub1Q8C0D0 Golph3-202ENSMUST00000226517 2359 ntBASIC20.37■□□□□ 0.85
Trub1Q8C0D0 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trub1Q8C0D0 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Trub1Q8C0D0 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trub1Q8C0D0 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Trub1Q8C0D0 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Trub1Q8C0D0 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trub1Q8C0D0 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trub1Q8C0D0 Gm21956-201ENSMUST00000179946 522 ntBASIC20.36■□□□□ 0.85
Trub1Q8C0D0 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Trub1Q8C0D0 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trub1Q8C0D0 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Trub1Q8C0D0 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trub1Q8C0D0 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trub1Q8C0D0 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trub1Q8C0D0 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trub1Q8C0D0 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Trub1Q8C0D0 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trub1Q8C0D0 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC20.35■□□□□ 0.85
Trub1Q8C0D0 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Trub1Q8C0D0 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Trub1Q8C0D0 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trub1Q8C0D0 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trub1Q8C0D0 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC20.35■□□□□ 0.85
Trub1Q8C0D0 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Trub1Q8C0D0 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Trub1Q8C0D0 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trub1Q8C0D0 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trub1Q8C0D0 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Trub1Q8C0D0 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trub1Q8C0D0 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trub1Q8C0D0 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Trub1Q8C0D0 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trub1Q8C0D0 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trub1Q8C0D0 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Trub1Q8C0D0 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trub1Q8C0D0 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
Trub1Q8C0D0 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trub1Q8C0D0 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC20.34■□□□□ 0.85
Trub1Q8C0D0 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC20.34■□□□□ 0.85
Trub1Q8C0D0 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trub1Q8C0D0 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC20.34■□□□□ 0.85
Trub1Q8C0D0 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
Trub1Q8C0D0 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trub1Q8C0D0 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Trub1Q8C0D0 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
Trub1Q8C0D0 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trub1Q8C0D0 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Trub1Q8C0D0 Gm13241-201ENSMUST00000094493 780 ntBASIC20.33■□□□□ 0.85
Trub1Q8C0D0 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trub1Q8C0D0 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Trub1Q8C0D0 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trub1Q8C0D0 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC20.32■□□□□ 0.84
Trub1Q8C0D0 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trub1Q8C0D0 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trub1Q8C0D0 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trub1Q8C0D0 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trub1Q8C0D0 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC20.32■□□□□ 0.84
Trub1Q8C0D0 AC140930.3-201ENSMUST00000222935 274 ntBASIC20.32■□□□□ 0.84
Trub1Q8C0D0 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Trub1Q8C0D0 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trub1Q8C0D0 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Trub1Q8C0D0 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Trub1Q8C0D0 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Trub1Q8C0D0 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trub1Q8C0D0 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trub1Q8C0D0 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC20.31■□□□□ 0.84
Trub1Q8C0D0 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Trub1Q8C0D0 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 45.2 ms