Protein–RNA interactions for Protein: Q8BXJ2

Trerf1, Transcriptional-regulating factor 1, mousemouse

Predictions only

Length 1,205 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trerf1Q8BXJ2 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trerf1Q8BXJ2 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC20.59■□□□□ 0.89
Trerf1Q8BXJ2 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Trerf1Q8BXJ2 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trerf1Q8BXJ2 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Trerf1Q8BXJ2 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Trerf1Q8BXJ2 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trerf1Q8BXJ2 Gm5112-201ENSMUST00000204407 2368 ntBASIC20.58■□□□□ 0.89
Trerf1Q8BXJ2 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Trerf1Q8BXJ2 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
Trerf1Q8BXJ2 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC20.58■□□□□ 0.89
Trerf1Q8BXJ2 Gm43530-201ENSMUST00000195920 274 ntBASIC20.58■□□□□ 0.89
Trerf1Q8BXJ2 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Trerf1Q8BXJ2 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC20.58■□□□□ 0.88
Trerf1Q8BXJ2 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Trerf1Q8BXJ2 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Trerf1Q8BXJ2 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
Trerf1Q8BXJ2 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Trerf1Q8BXJ2 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Trerf1Q8BXJ2 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC20.58■□□□□ 0.88
Trerf1Q8BXJ2 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Trerf1Q8BXJ2 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trerf1Q8BXJ2 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC20.57■□□□□ 0.88
Trerf1Q8BXJ2 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Trerf1Q8BXJ2 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Trerf1Q8BXJ2 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
Trerf1Q8BXJ2 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Trerf1Q8BXJ2 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Trerf1Q8BXJ2 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC20.57■□□□□ 0.88
Trerf1Q8BXJ2 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trerf1Q8BXJ2 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Trerf1Q8BXJ2 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trerf1Q8BXJ2 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trerf1Q8BXJ2 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
Trerf1Q8BXJ2 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trerf1Q8BXJ2 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Trerf1Q8BXJ2 Snhg20-203ENSMUST00000182811 2153 ntBASIC20.56■□□□□ 0.88
Trerf1Q8BXJ2 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trerf1Q8BXJ2 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trerf1Q8BXJ2 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trerf1Q8BXJ2 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trerf1Q8BXJ2 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trerf1Q8BXJ2 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trerf1Q8BXJ2 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trerf1Q8BXJ2 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Trerf1Q8BXJ2 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trerf1Q8BXJ2 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trerf1Q8BXJ2 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Trerf1Q8BXJ2 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trerf1Q8BXJ2 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
Trerf1Q8BXJ2 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trerf1Q8BXJ2 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trerf1Q8BXJ2 Gm9207-201ENSMUST00000198773 1115 ntBASIC20.54■□□□□ 0.88
Trerf1Q8BXJ2 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC20.54■□□□□ 0.88
Trerf1Q8BXJ2 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
Trerf1Q8BXJ2 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trerf1Q8BXJ2 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Trerf1Q8BXJ2 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Trerf1Q8BXJ2 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trerf1Q8BXJ2 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trerf1Q8BXJ2 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Trerf1Q8BXJ2 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trerf1Q8BXJ2 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trerf1Q8BXJ2 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trerf1Q8BXJ2 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Trerf1Q8BXJ2 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trerf1Q8BXJ2 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Trerf1Q8BXJ2 Gm12821-201ENSMUST00000120022 600 ntBASIC20.53■□□□□ 0.88
Trerf1Q8BXJ2 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trerf1Q8BXJ2 Appbp2os-202ENSMUST00000206972 447 ntBASIC20.53■□□□□ 0.88
Trerf1Q8BXJ2 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trerf1Q8BXJ2 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trerf1Q8BXJ2 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trerf1Q8BXJ2 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trerf1Q8BXJ2 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
Trerf1Q8BXJ2 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trerf1Q8BXJ2 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trerf1Q8BXJ2 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Trerf1Q8BXJ2 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trerf1Q8BXJ2 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trerf1Q8BXJ2 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trerf1Q8BXJ2 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trerf1Q8BXJ2 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Trerf1Q8BXJ2 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Trerf1Q8BXJ2 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trerf1Q8BXJ2 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
Trerf1Q8BXJ2 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trerf1Q8BXJ2 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Trerf1Q8BXJ2 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
Trerf1Q8BXJ2 AC166356.1-201ENSMUST00000228236 1426 ntBASIC20.52■□□□□ 0.87
Trerf1Q8BXJ2 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.87
Trerf1Q8BXJ2 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Trerf1Q8BXJ2 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
Trerf1Q8BXJ2 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Trerf1Q8BXJ2 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trerf1Q8BXJ2 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trerf1Q8BXJ2 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trerf1Q8BXJ2 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trerf1Q8BXJ2 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC20.51■□□□□ 0.87
Trerf1Q8BXJ2 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC20.51■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms