Protein–RNA interactions for Protein: Q8BGE6

Atg4b, Cysteine protease ATG4B, mousemouse

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Atg4bQ8BGE6 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Atg4bQ8BGE6 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
Atg4bQ8BGE6 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Atg4bQ8BGE6 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Atg4bQ8BGE6 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Atg4bQ8BGE6 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Atg4bQ8BGE6 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Atg4bQ8BGE6 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Atg4bQ8BGE6 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Atg4bQ8BGE6 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Atg4bQ8BGE6 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Atg4bQ8BGE6 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Atg4bQ8BGE6 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Atg4bQ8BGE6 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Atg4bQ8BGE6 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC18.6■□□□□ 0.57
Atg4bQ8BGE6 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Atg4bQ8BGE6 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Atg4bQ8BGE6 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Atg4bQ8BGE6 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Atg4bQ8BGE6 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC18.6■□□□□ 0.57
Atg4bQ8BGE6 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Atg4bQ8BGE6 Gm5576-201ENSMUST00000075809 1236 ntBASIC18.6■□□□□ 0.57
Atg4bQ8BGE6 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Atg4bQ8BGE6 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Atg4bQ8BGE6 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Atg4bQ8BGE6 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Atg4bQ8BGE6 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
Atg4bQ8BGE6 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Atg4bQ8BGE6 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Atg4bQ8BGE6 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Atg4bQ8BGE6 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Atg4bQ8BGE6 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Atg4bQ8BGE6 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC18.58■□□□□ 0.56
Atg4bQ8BGE6 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC18.58■□□□□ 0.56
Atg4bQ8BGE6 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Atg4bQ8BGE6 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Atg4bQ8BGE6 Gm10209-201ENSMUST00000203397 1607 ntBASIC18.58■□□□□ 0.56
Atg4bQ8BGE6 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Atg4bQ8BGE6 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Atg4bQ8BGE6 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC18.57■□□□□ 0.56
Atg4bQ8BGE6 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Atg4bQ8BGE6 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
Atg4bQ8BGE6 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Atg4bQ8BGE6 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Atg4bQ8BGE6 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Atg4bQ8BGE6 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Atg4bQ8BGE6 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Atg4bQ8BGE6 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Atg4bQ8BGE6 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Atg4bQ8BGE6 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Atg4bQ8BGE6 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Atg4bQ8BGE6 Gm6802-201ENSMUST00000167843 1983 ntBASIC18.56■□□□□ 0.56
Atg4bQ8BGE6 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Atg4bQ8BGE6 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Atg4bQ8BGE6 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Atg4bQ8BGE6 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Atg4bQ8BGE6 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Atg4bQ8BGE6 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Atg4bQ8BGE6 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC18.56■□□□□ 0.56
Atg4bQ8BGE6 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Atg4bQ8BGE6 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Atg4bQ8BGE6 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Atg4bQ8BGE6 Gm12821-201ENSMUST00000120022 600 ntBASIC18.55■□□□□ 0.56
Atg4bQ8BGE6 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC18.55■□□□□ 0.56
Atg4bQ8BGE6 Appbp2os-202ENSMUST00000206972 447 ntBASIC18.55■□□□□ 0.56
Atg4bQ8BGE6 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Atg4bQ8BGE6 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Atg4bQ8BGE6 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Atg4bQ8BGE6 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC18.55■□□□□ 0.56
Atg4bQ8BGE6 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Atg4bQ8BGE6 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Atg4bQ8BGE6 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Atg4bQ8BGE6 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Atg4bQ8BGE6 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Atg4bQ8BGE6 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Atg4bQ8BGE6 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Atg4bQ8BGE6 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Atg4bQ8BGE6 Gm27454-201ENSMUST00000185090 204 ntBASIC18.54■□□□□ 0.56
Atg4bQ8BGE6 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Atg4bQ8BGE6 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Atg4bQ8BGE6 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Atg4bQ8BGE6 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Atg4bQ8BGE6 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Atg4bQ8BGE6 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Atg4bQ8BGE6 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Atg4bQ8BGE6 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Atg4bQ8BGE6 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Atg4bQ8BGE6 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Atg4bQ8BGE6 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Atg4bQ8BGE6 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Atg4bQ8BGE6 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Atg4bQ8BGE6 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Atg4bQ8BGE6 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC18.52■□□□□ 0.56
Atg4bQ8BGE6 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Atg4bQ8BGE6 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.56
Atg4bQ8BGE6 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.56
Atg4bQ8BGE6 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Atg4bQ8BGE6 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Atg4bQ8BGE6 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Atg4bQ8BGE6 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 23 ms