Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 Gm42569-201ENSMUST00000200539 472 ntBASIC24.54■■□□□ 1.52
Ddx58Q6Q899 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC24.54■■□□□ 1.52
Ddx58Q6Q899 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Ddx58Q6Q899 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Ddx58Q6Q899 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Ddx58Q6Q899 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Ddx58Q6Q899 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Ddx58Q6Q899 Gm10033-202ENSMUST00000211874 928 ntBASIC24.53■■□□□ 1.52
Ddx58Q6Q899 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
Ddx58Q6Q899 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
Ddx58Q6Q899 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC24.53■■□□□ 1.52
Ddx58Q6Q899 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC24.52■■□□□ 1.52
Ddx58Q6Q899 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Ddx58Q6Q899 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC24.52■■□□□ 1.52
Ddx58Q6Q899 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
Ddx58Q6Q899 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC24.52■■□□□ 1.52
Ddx58Q6Q899 Gm15043-201ENSMUST00000118843 1543 ntBASIC24.51■■□□□ 1.51
Ddx58Q6Q899 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC24.51■■□□□ 1.51
Ddx58Q6Q899 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC24.51■■□□□ 1.51
Ddx58Q6Q899 Gm7291-201ENSMUST00000199147 382 ntBASIC24.51■■□□□ 1.51
Ddx58Q6Q899 Gm18671-201ENSMUST00000214826 683 ntBASIC24.51■■□□□ 1.51
Ddx58Q6Q899 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Ddx58Q6Q899 AC152827.1-201ENSMUST00000221143 2189 ntBASIC24.51■■□□□ 1.51
Ddx58Q6Q899 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Ddx58Q6Q899 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
Ddx58Q6Q899 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Ddx58Q6Q899 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
Ddx58Q6Q899 Gm27405-201ENSMUST00000184201 112 ntBASIC24.5■■□□□ 1.51
Ddx58Q6Q899 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC24.5■■□□□ 1.51
Ddx58Q6Q899 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
Ddx58Q6Q899 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
Ddx58Q6Q899 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
Ddx58Q6Q899 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
Ddx58Q6Q899 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC24.49■■□□□ 1.51
Ddx58Q6Q899 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
Ddx58Q6Q899 Gm42778-201ENSMUST00000199644 553 ntBASIC24.49■■□□□ 1.51
Ddx58Q6Q899 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC24.49■■□□□ 1.51
Ddx58Q6Q899 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC24.49■■□□□ 1.51
Ddx58Q6Q899 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Ddx58Q6Q899 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC24.49■■□□□ 1.51
Ddx58Q6Q899 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Ddx58Q6Q899 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
Ddx58Q6Q899 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ddx58Q6Q899 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC24.48■■□□□ 1.51
Ddx58Q6Q899 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ddx58Q6Q899 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ddx58Q6Q899 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC24.48■■□□□ 1.51
Ddx58Q6Q899 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ddx58Q6Q899 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ddx58Q6Q899 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ddx58Q6Q899 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Ddx58Q6Q899 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC24.47■■□□□ 1.51
Ddx58Q6Q899 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
Ddx58Q6Q899 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Ddx58Q6Q899 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Ddx58Q6Q899 Gm9988-201ENSMUST00000069786 435 ntBASIC24.47■■□□□ 1.51
Ddx58Q6Q899 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.51
Ddx58Q6Q899 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC24.47■■□□□ 1.51
Ddx58Q6Q899 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Ddx58Q6Q899 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC24.46■■□□□ 1.51
Ddx58Q6Q899 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Ddx58Q6Q899 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
Ddx58Q6Q899 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Ddx58Q6Q899 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
Ddx58Q6Q899 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC24.46■■□□□ 1.51
Ddx58Q6Q899 Cdkn3-203ENSMUST00000227149 1952 ntBASIC24.46■■□□□ 1.51
Ddx58Q6Q899 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC24.46■■□□□ 1.51
Ddx58Q6Q899 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC24.46■■□□□ 1.51
Ddx58Q6Q899 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Ddx58Q6Q899 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
Ddx58Q6Q899 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.51
Ddx58Q6Q899 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC24.45■■□□□ 1.5
Ddx58Q6Q899 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
Ddx58Q6Q899 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC24.45■■□□□ 1.5
Ddx58Q6Q899 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
Ddx58Q6Q899 AV356131-201ENSMUST00000206201 750 ntBASIC24.45■■□□□ 1.5
Ddx58Q6Q899 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
Ddx58Q6Q899 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC24.44■■□□□ 1.5
Ddx58Q6Q899 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
Ddx58Q6Q899 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Ddx58Q6Q899 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC24.44■■□□□ 1.5
Ddx58Q6Q899 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC24.44■■□□□ 1.5
Ddx58Q6Q899 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC24.44■■□□□ 1.5
Ddx58Q6Q899 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Ddx58Q6Q899 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC24.44■■□□□ 1.5
Ddx58Q6Q899 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Ddx58Q6Q899 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Ddx58Q6Q899 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC24.43■■□□□ 1.5
Ddx58Q6Q899 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC24.43■■□□□ 1.5
Ddx58Q6Q899 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC24.43■■□□□ 1.5
Ddx58Q6Q899 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC24.43■■□□□ 1.5
Ddx58Q6Q899 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC24.43■■□□□ 1.5
Ddx58Q6Q899 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
Ddx58Q6Q899 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC24.43■■□□□ 1.5
Ddx58Q6Q899 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC24.43■■□□□ 1.5
Ddx58Q6Q899 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
Ddx58Q6Q899 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
Ddx58Q6Q899 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Ddx58Q6Q899 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC24.43■■□□□ 1.5
Ddx58Q6Q899 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
Retrieved 100 of 76,532 protein–RNA pairs in 20 ms