Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC20.6■□□□□ 0.89
Hmgb4Q6P8W9 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Hmgb4Q6P8W9 Gm34220-201ENSMUST00000223001 2709 ntBASIC20.6■□□□□ 0.89
Hmgb4Q6P8W9 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Hmgb4Q6P8W9 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Hmgb4Q6P8W9 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Hmgb4Q6P8W9 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC20.6■□□□□ 0.89
Hmgb4Q6P8W9 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Hmgb4Q6P8W9 Smad6-203ENSMUST00000179458 273 ntBASIC20.6■□□□□ 0.89
Hmgb4Q6P8W9 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC20.6■□□□□ 0.89
Hmgb4Q6P8W9 Gm10493-201ENSMUST00000097270 612 ntBASIC20.6■□□□□ 0.89
Hmgb4Q6P8W9 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Hmgb4Q6P8W9 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC20.59■□□□□ 0.89
Hmgb4Q6P8W9 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Hmgb4Q6P8W9 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Hmgb4Q6P8W9 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Hmgb4Q6P8W9 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Hmgb4Q6P8W9 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Hmgb4Q6P8W9 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Hmgb4Q6P8W9 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Hmgb4Q6P8W9 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Hmgb4Q6P8W9 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Hmgb4Q6P8W9 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
Hmgb4Q6P8W9 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Hmgb4Q6P8W9 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Hmgb4Q6P8W9 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Hmgb4Q6P8W9 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Hmgb4Q6P8W9 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Hmgb4Q6P8W9 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
Hmgb4Q6P8W9 Gm42569-201ENSMUST00000200539 472 ntBASIC20.58■□□□□ 0.89
Hmgb4Q6P8W9 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.88
Hmgb4Q6P8W9 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Hmgb4Q6P8W9 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
Hmgb4Q6P8W9 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC20.58■□□□□ 0.88
Hmgb4Q6P8W9 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Hmgb4Q6P8W9 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Hmgb4Q6P8W9 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Hmgb4Q6P8W9 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Hmgb4Q6P8W9 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC20.57■□□□□ 0.88
Hmgb4Q6P8W9 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Hmgb4Q6P8W9 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Hmgb4Q6P8W9 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC20.57■□□□□ 0.88
Hmgb4Q6P8W9 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC20.57■□□□□ 0.88
Hmgb4Q6P8W9 Gm26571-201ENSMUST00000181399 666 ntBASIC20.57■□□□□ 0.88
Hmgb4Q6P8W9 Gm27045-201ENSMUST00000182145 1402 ntBASIC20.57■□□□□ 0.88
Hmgb4Q6P8W9 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC20.57■□□□□ 0.88
Hmgb4Q6P8W9 AC099934.2-201ENSMUST00000196389 70 ntBASIC20.57■□□□□ 0.88
Hmgb4Q6P8W9 AC156953.1-201ENSMUST00000196953 70 ntBASIC20.57■□□□□ 0.88
Hmgb4Q6P8W9 AC157822.2-201ENSMUST00000200291 70 ntBASIC20.57■□□□□ 0.88
Hmgb4Q6P8W9 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Hmgb4Q6P8W9 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Hmgb4Q6P8W9 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Hmgb4Q6P8W9 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Hmgb4Q6P8W9 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Hmgb4Q6P8W9 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC20.56■□□□□ 0.88
Hmgb4Q6P8W9 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
Hmgb4Q6P8W9 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Hmgb4Q6P8W9 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Hmgb4Q6P8W9 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Hmgb4Q6P8W9 AC165080.2-201ENSMUST00000217491 1530 ntBASIC20.56■□□□□ 0.88
Hmgb4Q6P8W9 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Hmgb4Q6P8W9 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Hmgb4Q6P8W9 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Hmgb4Q6P8W9 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Hmgb4Q6P8W9 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Hmgb4Q6P8W9 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Hmgb4Q6P8W9 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC20.55■□□□□ 0.88
Hmgb4Q6P8W9 Gm42642-201ENSMUST00000200683 355 ntBASIC20.55■□□□□ 0.88
Hmgb4Q6P8W9 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Hmgb4Q6P8W9 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Hmgb4Q6P8W9 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Hmgb4Q6P8W9 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Hmgb4Q6P8W9 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC20.55■□□□□ 0.88
Hmgb4Q6P8W9 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Hmgb4Q6P8W9 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Hmgb4Q6P8W9 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Hmgb4Q6P8W9 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Hmgb4Q6P8W9 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Hmgb4Q6P8W9 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Hmgb4Q6P8W9 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC20.54■□□□□ 0.88
Hmgb4Q6P8W9 Gm7291-201ENSMUST00000199147 382 ntBASIC20.54■□□□□ 0.88
Hmgb4Q6P8W9 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Hmgb4Q6P8W9 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Hmgb4Q6P8W9 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Hmgb4Q6P8W9 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Hmgb4Q6P8W9 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Hmgb4Q6P8W9 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Hmgb4Q6P8W9 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Hmgb4Q6P8W9 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Hmgb4Q6P8W9 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC20.53■□□□□ 0.88
Hmgb4Q6P8W9 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC20.53■□□□□ 0.88
Hmgb4Q6P8W9 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Hmgb4Q6P8W9 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Hmgb4Q6P8W9 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Hmgb4Q6P8W9 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Hmgb4Q6P8W9 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Hmgb4Q6P8W9 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Hmgb4Q6P8W9 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Hmgb4Q6P8W9 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Hmgb4Q6P8W9 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 18.6 ms