Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col7a1Q63870 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col7a1Q63870 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col7a1Q63870 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
Col7a1Q63870 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC16.81■□□□□ 0.28
Col7a1Q63870 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col7a1Q63870 Gm37563-201ENSMUST00000192580 1513 ntBASIC16.81■□□□□ 0.28
Col7a1Q63870 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC16.81■□□□□ 0.28
Col7a1Q63870 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col7a1Q63870 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC16.81■□□□□ 0.28
Col7a1Q63870 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Col7a1Q63870 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col7a1Q63870 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col7a1Q63870 Gm44672-201ENSMUST00000206944 1098 ntBASIC16.8■□□□□ 0.28
Col7a1Q63870 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
Col7a1Q63870 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC16.8■□□□□ 0.28
Col7a1Q63870 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col7a1Q63870 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col7a1Q63870 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Col7a1Q63870 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col7a1Q63870 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC16.8■□□□□ 0.28
Col7a1Q63870 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC16.8■□□□□ 0.28
Col7a1Q63870 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col7a1Q63870 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC16.8■□□□□ 0.28
Col7a1Q63870 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col7a1Q63870 Mir1199-201ENSMUST00000117015 119 ntBASIC16.8■□□□□ 0.28
Col7a1Q63870 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Col7a1Q63870 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col7a1Q63870 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC16.79■□□□□ 0.28
Col7a1Q63870 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col7a1Q63870 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col7a1Q63870 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC16.79■□□□□ 0.28
Col7a1Q63870 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col7a1Q63870 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Col7a1Q63870 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col7a1Q63870 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col7a1Q63870 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col7a1Q63870 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col7a1Q63870 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Col7a1Q63870 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Col7a1Q63870 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col7a1Q63870 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col7a1Q63870 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col7a1Q63870 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Col7a1Q63870 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC16.78■□□□□ 0.28
Col7a1Q63870 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Col7a1Q63870 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Col7a1Q63870 CT030146.1-201ENSMUST00000220919 217 ntBASIC16.78■□□□□ 0.28
Col7a1Q63870 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col7a1Q63870 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col7a1Q63870 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Col7a1Q63870 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col7a1Q63870 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Col7a1Q63870 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Col7a1Q63870 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col7a1Q63870 Gm20472-201ENSMUST00000174403 1240 ntBASIC16.77■□□□□ 0.27
Col7a1Q63870 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
Col7a1Q63870 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col7a1Q63870 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col7a1Q63870 Mir5122-201ENSMUST00000175004 89 ntBASIC16.76■□□□□ 0.27
Col7a1Q63870 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC16.76■□□□□ 0.27
Col7a1Q63870 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC16.76■□□□□ 0.27
Col7a1Q63870 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Col7a1Q63870 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Col7a1Q63870 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Col7a1Q63870 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col7a1Q63870 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col7a1Q63870 H3f3aos-201ENSMUST00000097448 2905 ntBASIC16.76■□□□□ 0.27
Col7a1Q63870 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col7a1Q63870 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Col7a1Q63870 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col7a1Q63870 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Col7a1Q63870 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col7a1Q63870 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col7a1Q63870 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col7a1Q63870 AC154649.1-201ENSMUST00000227392 384 ntBASIC16.76■□□□□ 0.27
Col7a1Q63870 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Col7a1Q63870 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Col7a1Q63870 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Col7a1Q63870 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC16.75■□□□□ 0.27
Col7a1Q63870 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
Col7a1Q63870 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col7a1Q63870 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col7a1Q63870 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Col7a1Q63870 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Col7a1Q63870 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC16.75■□□□□ 0.27
Col7a1Q63870 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC16.75■□□□□ 0.27
Col7a1Q63870 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Col7a1Q63870 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col7a1Q63870 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col7a1Q63870 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Col7a1Q63870 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col7a1Q63870 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col7a1Q63870 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
Col7a1Q63870 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col7a1Q63870 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col7a1Q63870 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col7a1Q63870 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC16.73■□□□□ 0.27
Col7a1Q63870 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Col7a1Q63870 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 17 ms