Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Col8a1Q00780 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col8a1Q00780 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
Col8a1Q00780 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Col8a1Q00780 Gm14281-201ENSMUST00000121700 1294 ntBASIC16.83■□□□□ 0.28
Col8a1Q00780 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Col8a1Q00780 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Col8a1Q00780 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC16.83■□□□□ 0.28
Col8a1Q00780 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Col8a1Q00780 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Col8a1Q00780 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Col8a1Q00780 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
Col8a1Q00780 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col8a1Q00780 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Col8a1Q00780 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Col8a1Q00780 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col8a1Q00780 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC16.82■□□□□ 0.28
Col8a1Q00780 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
Col8a1Q00780 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col8a1Q00780 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC16.82■□□□□ 0.28
Col8a1Q00780 Gm27801-201ENSMUST00000184174 223 ntBASIC16.82■□□□□ 0.28
Col8a1Q00780 AC130671.1-201ENSMUST00000227384 1237 ntBASIC16.82■□□□□ 0.28
Col8a1Q00780 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col8a1Q00780 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Col8a1Q00780 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Col8a1Q00780 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col8a1Q00780 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Col8a1Q00780 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col8a1Q00780 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Col8a1Q00780 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Col8a1Q00780 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col8a1Q00780 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
Col8a1Q00780 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col8a1Q00780 Gm13042-201ENSMUST00000119244 1955 ntBASIC16.81■□□□□ 0.28
Col8a1Q00780 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col8a1Q00780 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC16.81■□□□□ 0.28
Col8a1Q00780 Gm13168-201ENSMUST00000121771 632 ntBASIC16.81■□□□□ 0.28
Col8a1Q00780 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col8a1Q00780 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC16.81■□□□□ 0.28
Col8a1Q00780 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Col8a1Q00780 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Col8a1Q00780 Mir6982-201ENSMUST00000184354 68 ntBASIC16.81■□□□□ 0.28
Col8a1Q00780 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC16.81■□□□□ 0.28
Col8a1Q00780 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Col8a1Q00780 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Col8a1Q00780 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col8a1Q00780 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col8a1Q00780 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col8a1Q00780 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col8a1Q00780 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col8a1Q00780 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col8a1Q00780 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC16.8■□□□□ 0.28
Col8a1Q00780 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col8a1Q00780 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col8a1Q00780 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Col8a1Q00780 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col8a1Q00780 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Col8a1Q00780 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col8a1Q00780 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC16.8■□□□□ 0.28
Col8a1Q00780 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col8a1Q00780 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Col8a1Q00780 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col8a1Q00780 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Col8a1Q00780 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Col8a1Q00780 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC16.8■□□□□ 0.28
Col8a1Q00780 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col8a1Q00780 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col8a1Q00780 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Col8a1Q00780 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col8a1Q00780 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Col8a1Q00780 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Col8a1Q00780 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col8a1Q00780 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col8a1Q00780 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Col8a1Q00780 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col8a1Q00780 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Col8a1Q00780 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col8a1Q00780 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Col8a1Q00780 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col8a1Q00780 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col8a1Q00780 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Col8a1Q00780 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col8a1Q00780 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col8a1Q00780 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col8a1Q00780 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Col8a1Q00780 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC16.77■□□□□ 0.28
Col8a1Q00780 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
Col8a1Q00780 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col8a1Q00780 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col8a1Q00780 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col8a1Q00780 Gm6277-202ENSMUST00000224036 2779 ntBASIC16.77■□□□□ 0.28
Col8a1Q00780 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Col8a1Q00780 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC16.77■□□□□ 0.28
Col8a1Q00780 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col8a1Q00780 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col8a1Q00780 Gm43859-201ENSMUST00000200075 1412 ntBASIC16.77■□□□□ 0.27
Col8a1Q00780 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col8a1Q00780 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col8a1Q00780 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Col8a1Q00780 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 18 ms