Protein–RNA interactions for Protein: P20040

H-2 class II histocompatibility antigen, E-Q beta chain, mousemouse

Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
P20040 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
P20040 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
P20040 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
P20040 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
P20040 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC17.44■□□□□ 0.38
P20040 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
P20040 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
P20040 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
P20040 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC17.44■□□□□ 0.38
P20040 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
P20040 Gm13241-201ENSMUST00000094493 780 ntBASIC17.44■□□□□ 0.38
P20040 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC17.44■□□□□ 0.38
P20040 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
P20040 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC17.43■□□□□ 0.38
P20040 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
P20040 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
P20040 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
P20040 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC17.43■□□□□ 0.38
P20040 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
P20040 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
P20040 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
P20040 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
P20040 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC17.42■□□□□ 0.38
P20040 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
P20040 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC17.42■□□□□ 0.38
P20040 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
P20040 Gm37035-201ENSMUST00000194809 2148 ntBASIC17.42■□□□□ 0.38
P20040 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
P20040 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
P20040 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
P20040 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
P20040 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
P20040 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC17.41■□□□□ 0.38
P20040 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC17.41■□□□□ 0.38
P20040 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
P20040 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
P20040 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC17.41■□□□□ 0.38
P20040 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
P20040 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC17.41■□□□□ 0.38
P20040 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
P20040 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
P20040 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.38
P20040 Gm9870-201ENSMUST00000063874 645 ntBASIC17.41■□□□□ 0.38
P20040 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
P20040 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
P20040 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
P20040 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
P20040 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
P20040 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
P20040 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
P20040 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
P20040 Hsf1-204ENSMUST00000226872 2104 ntBASIC17.4■□□□□ 0.38
P20040 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
P20040 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
P20040 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
P20040 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC17.4■□□□□ 0.38
P20040 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
P20040 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
P20040 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
P20040 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
P20040 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
P20040 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC17.39■□□□□ 0.37
P20040 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC17.39■□□□□ 0.37
P20040 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
P20040 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
P20040 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
P20040 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
P20040 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
P20040 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC17.39■□□□□ 0.37
P20040 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
P20040 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC17.38■□□□□ 0.37
P20040 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
P20040 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
P20040 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
P20040 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
P20040 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC17.38■□□□□ 0.37
P20040 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
P20040 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC17.38■□□□□ 0.37
P20040 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC17.38■□□□□ 0.37
P20040 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
P20040 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
P20040 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC17.38■□□□□ 0.37
P20040 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
P20040 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
P20040 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
P20040 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
P20040 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
P20040 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
P20040 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
P20040 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
P20040 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
P20040 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC17.37■□□□□ 0.37
P20040 Gm7143-201ENSMUST00000222811 859 ntBASIC17.37■□□□□ 0.37
P20040 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
P20040 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
P20040 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
P20040 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
P20040 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
P20040 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
P20040 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms