Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Msx1P13297 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Msx1P13297 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Msx1P13297 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Msx1P13297 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Msx1P13297 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Msx1P13297 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC18.68■□□□□ 0.58
Msx1P13297 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Msx1P13297 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
Msx1P13297 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
Msx1P13297 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Msx1P13297 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
Msx1P13297 AC152827.1-201ENSMUST00000221143 2189 ntBASIC18.68■□□□□ 0.58
Msx1P13297 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Msx1P13297 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Msx1P13297 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Msx1P13297 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Msx1P13297 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Msx1P13297 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Msx1P13297 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC18.67■□□□□ 0.58
Msx1P13297 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC18.67■□□□□ 0.58
Msx1P13297 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Msx1P13297 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Msx1P13297 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC18.67■□□□□ 0.58
Msx1P13297 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Msx1P13297 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
Msx1P13297 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Msx1P13297 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Msx1P13297 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Msx1P13297 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Msx1P13297 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Msx1P13297 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Msx1P13297 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Msx1P13297 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Msx1P13297 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Msx1P13297 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Msx1P13297 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Msx1P13297 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Msx1P13297 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Msx1P13297 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Msx1P13297 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Msx1P13297 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Msx1P13297 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Msx1P13297 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Msx1P13297 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Msx1P13297 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC18.65■□□□□ 0.58
Msx1P13297 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Msx1P13297 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Msx1P13297 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Msx1P13297 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Msx1P13297 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Msx1P13297 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Msx1P13297 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC18.65■□□□□ 0.58
Msx1P13297 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC18.65■□□□□ 0.58
Msx1P13297 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC18.65■□□□□ 0.58
Msx1P13297 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC18.65■□□□□ 0.58
Msx1P13297 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Msx1P13297 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Msx1P13297 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
Msx1P13297 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Msx1P13297 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC18.64■□□□□ 0.58
Msx1P13297 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Msx1P13297 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC18.64■□□□□ 0.57
Msx1P13297 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Msx1P13297 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC18.64■□□□□ 0.57
Msx1P13297 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC18.64■□□□□ 0.57
Msx1P13297 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Msx1P13297 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Msx1P13297 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC18.64■□□□□ 0.57
Msx1P13297 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Msx1P13297 Gm10129-202ENSMUST00000193100 1316 ntBASIC18.64■□□□□ 0.57
Msx1P13297 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC18.64■□□□□ 0.57
Msx1P13297 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC18.64■□□□□ 0.57
Msx1P13297 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Msx1P13297 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
Msx1P13297 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Msx1P13297 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Msx1P13297 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Msx1P13297 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Msx1P13297 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Msx1P13297 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
Msx1P13297 CT025689.6-201ENSMUST00000224991 1104 ntBASIC18.63■□□□□ 0.57
Msx1P13297 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Msx1P13297 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Msx1P13297 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
Msx1P13297 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Msx1P13297 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Msx1P13297 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Msx1P13297 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Msx1P13297 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Msx1P13297 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Msx1P13297 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Msx1P13297 Gm40848-201ENSMUST00000221998 324 ntBASIC18.62■□□□□ 0.57
Msx1P13297 AC166356.1-201ENSMUST00000228236 1426 ntBASIC18.62■□□□□ 0.57
Msx1P13297 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Msx1P13297 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Msx1P13297 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Msx1P13297 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Msx1P13297 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Msx1P13297 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 25.9 ms