Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Chmp6P0C0A3 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Chmp6P0C0A3 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Chmp6P0C0A3 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Chmp6P0C0A3 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
Chmp6P0C0A3 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Chmp6P0C0A3 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Chmp6P0C0A3 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
Chmp6P0C0A3 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC21.38■■□□□ 1.01
Chmp6P0C0A3 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Chmp6P0C0A3 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Chmp6P0C0A3 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Chmp6P0C0A3 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Chmp6P0C0A3 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Chmp6P0C0A3 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Chmp6P0C0A3 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Chmp6P0C0A3 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Chmp6P0C0A3 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Chmp6P0C0A3 Gm45417-201ENSMUST00000209533 758 ntBASIC21.37■■□□□ 1.01
Chmp6P0C0A3 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Chmp6P0C0A3 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
Chmp6P0C0A3 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Chmp6P0C0A3 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Chmp6P0C0A3 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Chmp6P0C0A3 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
Chmp6P0C0A3 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Chmp6P0C0A3 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Chmp6P0C0A3 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Chmp6P0C0A3 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Chmp6P0C0A3 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
Chmp6P0C0A3 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Chmp6P0C0A3 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Chmp6P0C0A3 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Chmp6P0C0A3 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Chmp6P0C0A3 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Chmp6P0C0A3 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
Chmp6P0C0A3 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC21.35■■□□□ 1.01
Chmp6P0C0A3 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC21.35■■□□□ 1.01
Chmp6P0C0A3 Mir6236-201ENSMUST00000184437 123 ntBASIC21.35■■□□□ 1.01
Chmp6P0C0A3 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
Chmp6P0C0A3 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Chmp6P0C0A3 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
Chmp6P0C0A3 Golph3-202ENSMUST00000226517 2359 ntBASIC21.34■■□□□ 1.01
Chmp6P0C0A3 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
Chmp6P0C0A3 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Chmp6P0C0A3 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
Chmp6P0C0A3 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC21.33■■□□□ 1.01
Chmp6P0C0A3 Gm5576-201ENSMUST00000075809 1236 ntBASIC21.33■■□□□ 1.01
Chmp6P0C0A3 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Chmp6P0C0A3 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Chmp6P0C0A3 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
Chmp6P0C0A3 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1
Chmp6P0C0A3 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Chmp6P0C0A3 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC21.33■■□□□ 1
Chmp6P0C0A3 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Chmp6P0C0A3 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC21.32■■□□□ 1
Chmp6P0C0A3 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Chmp6P0C0A3 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
Chmp6P0C0A3 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Chmp6P0C0A3 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Chmp6P0C0A3 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC21.31■■□□□ 1
Chmp6P0C0A3 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC21.31■■□□□ 1
Chmp6P0C0A3 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC21.31■■□□□ 1
Chmp6P0C0A3 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Chmp6P0C0A3 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Chmp6P0C0A3 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Chmp6P0C0A3 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC21.31■■□□□ 1
Chmp6P0C0A3 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC21.3■■□□□ 1
Chmp6P0C0A3 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC21.3■■□□□ 1
Chmp6P0C0A3 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC21.3■■□□□ 1
Chmp6P0C0A3 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC21.3■■□□□ 1
Chmp6P0C0A3 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC21.3■■□□□ 1
Chmp6P0C0A3 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Chmp6P0C0A3 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC21.3■■□□□ 1
Chmp6P0C0A3 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Chmp6P0C0A3 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Chmp6P0C0A3 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Chmp6P0C0A3 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Chmp6P0C0A3 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Chmp6P0C0A3 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC21.29■■□□□ 1
Chmp6P0C0A3 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC21.29■■□□□ 1
Chmp6P0C0A3 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC21.29■■□□□ 1
Chmp6P0C0A3 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Chmp6P0C0A3 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC21.29■■□□□ 1
Chmp6P0C0A3 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Chmp6P0C0A3 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC21.29■■□□□ 1
Chmp6P0C0A3 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC21.29■■□□□ 1
Chmp6P0C0A3 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Chmp6P0C0A3 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC21.28■■□□□ 1
Chmp6P0C0A3 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Chmp6P0C0A3 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Chmp6P0C0A3 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC21.28■■□□□ 1
Chmp6P0C0A3 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC21.28■■□□□ 1
Chmp6P0C0A3 Mir7075-201ENSMUST00000184187 82 ntBASIC21.28■■□□□ 1
Chmp6P0C0A3 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC21.28■■□□□ 1
Chmp6P0C0A3 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC21.28■■□□□ 1
Chmp6P0C0A3 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Chmp6P0C0A3 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC21.28■■□□□ 1
Chmp6P0C0A3 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Chmp6P0C0A3 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC21.28■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms