Protein–RNA interactions for Protein: O55187

Cbx4, E3 SUMO-protein ligase CBX4, mousemouse

Predictions only

Length 551 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cbx4O55187 Gm9207-201ENSMUST00000198773 1115 ntBASIC19.3■□□□□ 0.68
Cbx4O55187 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Cbx4O55187 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cbx4O55187 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
Cbx4O55187 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Cbx4O55187 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Cbx4O55187 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cbx4O55187 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC19.29■□□□□ 0.68
Cbx4O55187 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cbx4O55187 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cbx4O55187 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cbx4O55187 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC19.29■□□□□ 0.68
Cbx4O55187 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Cbx4O55187 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cbx4O55187 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Cbx4O55187 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cbx4O55187 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Cbx4O55187 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cbx4O55187 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC19.28■□□□□ 0.68
Cbx4O55187 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC19.28■□□□□ 0.68
Cbx4O55187 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cbx4O55187 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Cbx4O55187 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cbx4O55187 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cbx4O55187 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cbx4O55187 Gm6085-201ENSMUST00000182774 1470 ntBASIC19.28■□□□□ 0.68
Cbx4O55187 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cbx4O55187 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Cbx4O55187 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Cbx4O55187 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cbx4O55187 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Cbx4O55187 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cbx4O55187 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cbx4O55187 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Cbx4O55187 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC19.27■□□□□ 0.67
Cbx4O55187 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cbx4O55187 Gm6802-201ENSMUST00000167843 1983 ntBASIC19.26■□□□□ 0.67
Cbx4O55187 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Cbx4O55187 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Cbx4O55187 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Cbx4O55187 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cbx4O55187 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cbx4O55187 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
Cbx4O55187 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Cbx4O55187 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC19.26■□□□□ 0.67
Cbx4O55187 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC19.26■□□□□ 0.67
Cbx4O55187 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC19.26■□□□□ 0.67
Cbx4O55187 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC19.26■□□□□ 0.67
Cbx4O55187 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Cbx4O55187 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Cbx4O55187 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC19.25■□□□□ 0.67
Cbx4O55187 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC19.25■□□□□ 0.67
Cbx4O55187 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cbx4O55187 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cbx4O55187 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cbx4O55187 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Cbx4O55187 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cbx4O55187 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC19.25■□□□□ 0.67
Cbx4O55187 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Cbx4O55187 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC19.25■□□□□ 0.67
Cbx4O55187 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Cbx4O55187 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cbx4O55187 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC19.25■□□□□ 0.67
Cbx4O55187 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cbx4O55187 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cbx4O55187 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC19.24■□□□□ 0.67
Cbx4O55187 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cbx4O55187 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cbx4O55187 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cbx4O55187 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cbx4O55187 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
Cbx4O55187 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cbx4O55187 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Cbx4O55187 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cbx4O55187 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cbx4O55187 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Cbx4O55187 Gm21956-201ENSMUST00000179946 522 ntBASIC19.23■□□□□ 0.67
Cbx4O55187 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Cbx4O55187 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Cbx4O55187 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Cbx4O55187 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cbx4O55187 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cbx4O55187 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cbx4O55187 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cbx4O55187 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Cbx4O55187 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Cbx4O55187 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cbx4O55187 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cbx4O55187 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Cbx4O55187 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
Cbx4O55187 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cbx4O55187 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cbx4O55187 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
Cbx4O55187 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Cbx4O55187 Gm13241-201ENSMUST00000094493 780 ntBASIC19.21■□□□□ 0.67
Cbx4O55187 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC19.21■□□□□ 0.67
Cbx4O55187 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cbx4O55187 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cbx4O55187 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Cbx4O55187 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms