Protein–RNA interactions for Protein: B1AVK5

Col4a6, Collagen, type IV, alpha 6, mousemouse

Predictions only

Length 1,691 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a6B1AVK5 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col4a6B1AVK5 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col4a6B1AVK5 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col4a6B1AVK5 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col4a6B1AVK5 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col4a6B1AVK5 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col4a6B1AVK5 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col4a6B1AVK5 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC20.7■□□□□ 0.91
Col4a6B1AVK5 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
Col4a6B1AVK5 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
Col4a6B1AVK5 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col4a6B1AVK5 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col4a6B1AVK5 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Col4a6B1AVK5 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col4a6B1AVK5 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Col4a6B1AVK5 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC20.69■□□□□ 0.9
Col4a6B1AVK5 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC20.69■□□□□ 0.9
Col4a6B1AVK5 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC20.69■□□□□ 0.9
Col4a6B1AVK5 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col4a6B1AVK5 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col4a6B1AVK5 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Col4a6B1AVK5 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col4a6B1AVK5 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col4a6B1AVK5 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Col4a6B1AVK5 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Col4a6B1AVK5 Gm42911-201ENSMUST00000199360 1630 ntBASIC20.68■□□□□ 0.9
Col4a6B1AVK5 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC20.68■□□□□ 0.9
Col4a6B1AVK5 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Col4a6B1AVK5 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col4a6B1AVK5 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col4a6B1AVK5 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col4a6B1AVK5 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col4a6B1AVK5 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col4a6B1AVK5 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col4a6B1AVK5 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Col4a6B1AVK5 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col4a6B1AVK5 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col4a6B1AVK5 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Col4a6B1AVK5 Gm26524-201ENSMUST00000192339 390 ntBASIC20.67■□□□□ 0.9
Col4a6B1AVK5 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Col4a6B1AVK5 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Col4a6B1AVK5 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col4a6B1AVK5 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Col4a6B1AVK5 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col4a6B1AVK5 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col4a6B1AVK5 Gm10655-201ENSMUST00000098658 1397 ntBASIC20.66■□□□□ 0.9
Col4a6B1AVK5 Gm13534-201ENSMUST00000121169 513 ntBASIC20.66■□□□□ 0.9
Col4a6B1AVK5 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Col4a6B1AVK5 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC20.66■□□□□ 0.9
Col4a6B1AVK5 Gm6211-202ENSMUST00000167849 925 ntBASIC20.66■□□□□ 0.9
Col4a6B1AVK5 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Col4a6B1AVK5 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col4a6B1AVK5 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col4a6B1AVK5 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC20.66■□□□□ 0.9
Col4a6B1AVK5 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC20.65■□□□□ 0.9
Col4a6B1AVK5 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
Col4a6B1AVK5 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
Col4a6B1AVK5 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col4a6B1AVK5 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col4a6B1AVK5 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col4a6B1AVK5 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col4a6B1AVK5 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col4a6B1AVK5 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC20.64■□□□□ 0.9
Col4a6B1AVK5 Gm7290-201ENSMUST00000104990 617 ntBASIC20.64■□□□□ 0.9
Col4a6B1AVK5 Gm12918-201ENSMUST00000120234 636 ntBASIC20.64■□□□□ 0.9
Col4a6B1AVK5 Gm15710-201ENSMUST00000121821 636 ntBASIC20.64■□□□□ 0.9
Col4a6B1AVK5 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
Col4a6B1AVK5 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC20.64■□□□□ 0.9
Col4a6B1AVK5 Gm6420-201ENSMUST00000193885 723 ntBASIC20.64■□□□□ 0.9
Col4a6B1AVK5 Gm5075-201ENSMUST00000196916 622 ntBASIC20.64■□□□□ 0.9
Col4a6B1AVK5 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.9
Col4a6B1AVK5 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC20.64■□□□□ 0.9
Col4a6B1AVK5 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC20.64■□□□□ 0.9
Col4a6B1AVK5 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Col4a6B1AVK5 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col4a6B1AVK5 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC20.64■□□□□ 0.89
Col4a6B1AVK5 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Col4a6B1AVK5 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col4a6B1AVK5 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Col4a6B1AVK5 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col4a6B1AVK5 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col4a6B1AVK5 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col4a6B1AVK5 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Col4a6B1AVK5 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC20.63■□□□□ 0.89
Col4a6B1AVK5 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC20.63■□□□□ 0.89
Col4a6B1AVK5 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col4a6B1AVK5 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col4a6B1AVK5 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col4a6B1AVK5 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Col4a6B1AVK5 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col4a6B1AVK5 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC20.62■□□□□ 0.89
Col4a6B1AVK5 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Col4a6B1AVK5 AC122769.4-201ENSMUST00000228166 901 ntBASIC20.62■□□□□ 0.89
Col4a6B1AVK5 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Col4a6B1AVK5 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC20.62■□□□□ 0.89
Col4a6B1AVK5 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col4a6B1AVK5 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col4a6B1AVK5 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col4a6B1AVK5 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col4a6B1AVK5 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms