Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Pcdhgb8A0A140LI48 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC17.71■□□□□ 0.43
Pcdhgb8A0A140LI48 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Pcdhgb8A0A140LI48 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC17.71■□□□□ 0.43
Pcdhgb8A0A140LI48 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Pcdhgb8A0A140LI48 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Pcdhgb8A0A140LI48 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Pcdhgb8A0A140LI48 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Pcdhgb8A0A140LI48 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.42
Pcdhgb8A0A140LI48 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Pcdhgb8A0A140LI48 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC17.7■□□□□ 0.42
Pcdhgb8A0A140LI48 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Pcdhgb8A0A140LI48 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Pcdhgb8A0A140LI48 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Pcdhgb8A0A140LI48 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Pcdhgb8A0A140LI48 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Pcdhgb8A0A140LI48 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Pcdhgb8A0A140LI48 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
Pcdhgb8A0A140LI48 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Pcdhgb8A0A140LI48 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Pcdhgb8A0A140LI48 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdhgb8A0A140LI48 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdhgb8A0A140LI48 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Pcdhgb8A0A140LI48 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdhgb8A0A140LI48 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC17.69■□□□□ 0.42
Pcdhgb8A0A140LI48 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdhgb8A0A140LI48 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
Pcdhgb8A0A140LI48 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdhgb8A0A140LI48 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdhgb8A0A140LI48 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdhgb8A0A140LI48 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdhgb8A0A140LI48 Gm43034-201ENSMUST00000198678 1364 ntBASIC17.68■□□□□ 0.42
Pcdhgb8A0A140LI48 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdhgb8A0A140LI48 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Pcdhgb8A0A140LI48 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdhgb8A0A140LI48 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdhgb8A0A140LI48 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdhgb8A0A140LI48 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdhgb8A0A140LI48 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Pcdhgb8A0A140LI48 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
Pcdhgb8A0A140LI48 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Pcdhgb8A0A140LI48 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Pcdhgb8A0A140LI48 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Pcdhgb8A0A140LI48 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Pcdhgb8A0A140LI48 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC17.67■□□□□ 0.42
Pcdhgb8A0A140LI48 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Pcdhgb8A0A140LI48 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC17.67■□□□□ 0.42
Pcdhgb8A0A140LI48 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC17.67■□□□□ 0.42
Pcdhgb8A0A140LI48 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC17.67■□□□□ 0.42
Pcdhgb8A0A140LI48 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Pcdhgb8A0A140LI48 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC17.67■□□□□ 0.42
Pcdhgb8A0A140LI48 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Pcdhgb8A0A140LI48 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Pcdhgb8A0A140LI48 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Pcdhgb8A0A140LI48 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Pcdhgb8A0A140LI48 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Pcdhgb8A0A140LI48 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Pcdhgb8A0A140LI48 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC17.66■□□□□ 0.42
Pcdhgb8A0A140LI48 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Pcdhgb8A0A140LI48 AC158990.1-201ENSMUST00000221450 2016 ntBASIC17.65■□□□□ 0.42
Pcdhgb8A0A140LI48 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Pcdhgb8A0A140LI48 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Pcdhgb8A0A140LI48 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Pcdhgb8A0A140LI48 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Pcdhgb8A0A140LI48 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Pcdhgb8A0A140LI48 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Pcdhgb8A0A140LI48 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Pcdhgb8A0A140LI48 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Pcdhgb8A0A140LI48 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Pcdhgb8A0A140LI48 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
Pcdhgb8A0A140LI48 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Pcdhgb8A0A140LI48 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Pcdhgb8A0A140LI48 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Pcdhgb8A0A140LI48 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Pcdhgb8A0A140LI48 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC17.64■□□□□ 0.41
Pcdhgb8A0A140LI48 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC17.64■□□□□ 0.41
Pcdhgb8A0A140LI48 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Pcdhgb8A0A140LI48 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Pcdhgb8A0A140LI48 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Pcdhgb8A0A140LI48 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC17.63■□□□□ 0.41
Pcdhgb8A0A140LI48 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Pcdhgb8A0A140LI48 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Pcdhgb8A0A140LI48 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Pcdhgb8A0A140LI48 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Pcdhgb8A0A140LI48 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Pcdhgb8A0A140LI48 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Pcdhgb8A0A140LI48 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC17.63■□□□□ 0.41
Pcdhgb8A0A140LI48 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC17.63■□□□□ 0.41
Pcdhgb8A0A140LI48 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC17.63■□□□□ 0.41
Pcdhgb8A0A140LI48 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Pcdhgb8A0A140LI48 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Pcdhgb8A0A140LI48 Gm5913-201ENSMUST00000119397 1399 ntBASIC17.63■□□□□ 0.41
Pcdhgb8A0A140LI48 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
Pcdhgb8A0A140LI48 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Pcdhgb8A0A140LI48 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Pcdhgb8A0A140LI48 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Pcdhgb8A0A140LI48 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Pcdhgb8A0A140LI48 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Pcdhgb8A0A140LI48 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Pcdhgb8A0A140LI48 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms