Protein–RNA interactions for Protein: A0A075B5Z4

Trav1, T cell receptor alpha variable 1 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav1A0A075B5Z4 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trav1A0A075B5Z4 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Trav1A0A075B5Z4 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trav1A0A075B5Z4 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Trav1A0A075B5Z4 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trav1A0A075B5Z4 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trav1A0A075B5Z4 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Trav1A0A075B5Z4 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC18.38■□□□□ 0.53
Trav1A0A075B5Z4 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trav1A0A075B5Z4 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav1A0A075B5Z4 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav1A0A075B5Z4 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav1A0A075B5Z4 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav1A0A075B5Z4 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav1A0A075B5Z4 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
Trav1A0A075B5Z4 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav1A0A075B5Z4 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav1A0A075B5Z4 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC18.37■□□□□ 0.53
Trav1A0A075B5Z4 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trav1A0A075B5Z4 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trav1A0A075B5Z4 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
Trav1A0A075B5Z4 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trav1A0A075B5Z4 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trav1A0A075B5Z4 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trav1A0A075B5Z4 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trav1A0A075B5Z4 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trav1A0A075B5Z4 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trav1A0A075B5Z4 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trav1A0A075B5Z4 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trav1A0A075B5Z4 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trav1A0A075B5Z4 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
Trav1A0A075B5Z4 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trav1A0A075B5Z4 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trav1A0A075B5Z4 Iqck-206ENSMUST00000208658 2891 ntBASIC18.35■□□□□ 0.53
Trav1A0A075B5Z4 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trav1A0A075B5Z4 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC18.35■□□□□ 0.53
Trav1A0A075B5Z4 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC18.35■□□□□ 0.53
Trav1A0A075B5Z4 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Trav1A0A075B5Z4 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trav1A0A075B5Z4 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trav1A0A075B5Z4 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trav1A0A075B5Z4 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC18.34■□□□□ 0.53
Trav1A0A075B5Z4 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Trav1A0A075B5Z4 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
Trav1A0A075B5Z4 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
Trav1A0A075B5Z4 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Trav1A0A075B5Z4 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trav1A0A075B5Z4 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trav1A0A075B5Z4 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trav1A0A075B5Z4 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trav1A0A075B5Z4 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trav1A0A075B5Z4 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC18.34■□□□□ 0.53
Trav1A0A075B5Z4 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Trav1A0A075B5Z4 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
Trav1A0A075B5Z4 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Trav1A0A075B5Z4 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trav1A0A075B5Z4 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trav1A0A075B5Z4 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
Trav1A0A075B5Z4 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trav1A0A075B5Z4 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC18.33■□□□□ 0.52
Trav1A0A075B5Z4 AA386476-201ENSMUST00000098781 1665 ntBASIC18.33■□□□□ 0.52
Trav1A0A075B5Z4 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trav1A0A075B5Z4 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Trav1A0A075B5Z4 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trav1A0A075B5Z4 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trav1A0A075B5Z4 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trav1A0A075B5Z4 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trav1A0A075B5Z4 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trav1A0A075B5Z4 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Trav1A0A075B5Z4 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC18.32■□□□□ 0.52
Trav1A0A075B5Z4 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Trav1A0A075B5Z4 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trav1A0A075B5Z4 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Trav1A0A075B5Z4 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trav1A0A075B5Z4 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trav1A0A075B5Z4 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
Trav1A0A075B5Z4 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trav1A0A075B5Z4 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC18.31■□□□□ 0.52
Trav1A0A075B5Z4 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trav1A0A075B5Z4 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trav1A0A075B5Z4 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trav1A0A075B5Z4 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trav1A0A075B5Z4 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trav1A0A075B5Z4 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Trav1A0A075B5Z4 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trav1A0A075B5Z4 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trav1A0A075B5Z4 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trav1A0A075B5Z4 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trav1A0A075B5Z4 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC18.3■□□□□ 0.52
Trav1A0A075B5Z4 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Trav1A0A075B5Z4 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trav1A0A075B5Z4 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC18.3■□□□□ 0.52
Trav1A0A075B5Z4 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trav1A0A075B5Z4 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trav1A0A075B5Z4 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trav1A0A075B5Z4 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trav1A0A075B5Z4 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trav1A0A075B5Z4 Gm12922-201ENSMUST00000120626 809 ntBASIC18.29■□□□□ 0.52
Trav1A0A075B5Z4 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC18.29■□□□□ 0.52
Trav1A0A075B5Z4 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms