Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Nrap-202ENSMUST00000073536 5501 ntAPPRIS P4 TSL 1 (best) BASIC11.95□□□□□ -0.5
Traf1P39428 March10-204ENSMUST00000138977 2979 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Traf1P39428 Gm10652-201ENSMUST00000199790 2622 ntBASIC11.95□□□□□ -0.5
Traf1P39428 Dqx1-201ENSMUST00000077502 3257 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Traf1P39428 AC130671.3-201ENSMUST00000227393 1897 ntBASIC11.95□□□□□ -0.5
Traf1P39428 Morc3-206ENSMUST00000202261 4175 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Traf1P39428 Morc3-201ENSMUST00000044068 4178 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Traf1P39428 Gfi1b-204ENSMUST00000164290 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Traf1P39428 Itga3-202ENSMUST00000107739 4636 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Traf1P39428 Arhgef7-203ENSMUST00000098938 4628 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Traf1P39428 Scn10a-204ENSMUST00000214408 5877 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Traf1P39428 Abca3-203ENSMUST00000117337 5202 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Traf1P39428 H2-M10.4-201ENSMUST00000057502 1410 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Traf1P39428 Hjurp-201ENSMUST00000054674 4878 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Traf1P39428 Oas1h-201ENSMUST00000072476 1703 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Traf1P39428 Ankrd52-201ENSMUST00000014642 6620 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Traf1P39428 Sh3gl2-204ENSMUST00000107189 3231 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Traf1P39428 4930488L21Rik-202ENSMUST00000212638 3164 ntTSL 5 BASIC11.94□□□□□ -0.5
Traf1P39428 Rnf6-206ENSMUST00000161859 3452 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Traf1P39428 6430548M08Rik-203ENSMUST00000108950 3125 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Traf1P39428 Fam186a-202ENSMUST00000100209 9334 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Traf1P39428 Enam-201ENSMUST00000031222 5483 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Traf1P39428 Mapkbp1-201ENSMUST00000066058 6942 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Traf1P39428 Thsd4-206ENSMUST00000171654 8522 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Traf1P39428 Chrm5-201ENSMUST00000099589 1599 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
Traf1P39428 Ippk-202ENSMUST00000220447 4421 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Traf1P39428 Cd300ld5-201ENSMUST00000100239 852 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Traf1P39428 Cd300ld4-201ENSMUST00000100240 852 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Traf1P39428 Stmn3-201ENSMUST00000103045 1136 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Traf1P39428 Igkv3-9-201ENSMUST00000103398 359 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
Traf1P39428 Polr1c-203ENSMUST00000124655 829 ntTSL 5 BASIC11.94□□□□□ -0.5
Traf1P39428 Junos-202ENSMUST00000125438 559 ntTSL 2 BASIC11.94□□□□□ -0.5
Traf1P39428 Gm12847-201ENSMUST00000156219 413 ntTSL 5 BASIC11.94□□□□□ -0.5
Traf1P39428 Gm23081-201ENSMUST00000157845 297 ntBASIC11.94□□□□□ -0.5
Traf1P39428 Gm22994-201ENSMUST00000175422 82 ntBASIC11.94□□□□□ -0.5
Traf1P39428 Gm37390-201ENSMUST00000192452 872 ntBASIC11.94□□□□□ -0.5
Traf1P39428 1700052H01Rik-201ENSMUST00000196142 717 ntTSL 3 BASIC11.94□□□□□ -0.5
Traf1P39428 Gm44709-201ENSMUST00000207649 448 ntTSL 5 BASIC11.94□□□□□ -0.5
Traf1P39428 Mt1-203ENSMUST00000212291 633 ntTSL 2 BASIC11.94□□□□□ -0.5
Traf1P39428 Gm3889-201ENSMUST00000212467 612 ntBASIC11.94□□□□□ -0.5
Traf1P39428 Zfp445-205ENSMUST00000214626 1220 ntTSL 5 BASIC11.94□□□□□ -0.5
Traf1P39428 AC130217.1-201ENSMUST00000224146 909 ntBASIC11.94□□□□□ -0.5
Traf1P39428 Olfr985-201ENSMUST00000060345 1116 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
Traf1P39428 Cd300ld3-201ENSMUST00000092459 852 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Traf1P39428 Aplp2-202ENSMUST00000079758 3504 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Traf1P39428 AC131029.1-201ENSMUST00000226391 2929 ntBASIC11.94□□□□□ -0.5
Traf1P39428 2610005L07Rik-202ENSMUST00000140111 4009 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Traf1P39428 Dgkh-201ENSMUST00000074729 3967 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Traf1P39428 Ifi211-201ENSMUST00000009340 1785 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Traf1P39428 Rere-202ENSMUST00000105682 7728 ntAPPRIS P2 TSL 5 BASIC11.94□□□□□ -0.5
Traf1P39428 Msh3-201ENSMUST00000022220 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Traf1P39428 Txlng-201ENSMUST00000041370 3862 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Traf1P39428 Zfp110-201ENSMUST00000004614 3591 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Traf1P39428 Cdca2-207ENSMUST00000163100 3841 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Traf1P39428 Tox4-201ENSMUST00000022766 5350 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Traf1P39428 Mettl18-202ENSMUST00000111490 1419 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Traf1P39428 Gm13608-201ENSMUST00000121807 1406 ntBASIC11.94□□□□□ -0.5
Traf1P39428 Palm2-201ENSMUST00000102904 2958 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Traf1P39428 Golm1-201ENSMUST00000022039 3954 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Traf1P39428 Mdm1-203ENSMUST00000164077 2922 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Traf1P39428 Sirpa-204ENSMUST00000103203 3674 ntAPPRIS P3 TSL 5 BASIC11.93□□□□□ -0.5
Traf1P39428 Adcy7-202ENSMUST00000168545 5937 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Traf1P39428 Robo4-203ENSMUST00000115048 3392 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Traf1P39428 Gpi1-201ENSMUST00000038027 2884 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Traf1P39428 Thsd4-201ENSMUST00000034829 4816 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Traf1P39428 Sgsm1-202ENSMUST00000057209 4339 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Traf1P39428 Tldc1-201ENSMUST00000049156 3085 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Traf1P39428 Ybey-201ENSMUST00000049185 4522 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Traf1P39428 Hspa2-201ENSMUST00000080449 2524 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Traf1P39428 Myh1-203ENSMUST00000124516 6081 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Traf1P39428 Zmym3-209ENSMUST00000121520 5564 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Traf1P39428 Ppp1r3c-201ENSMUST00000087321 2719 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Traf1P39428 A630052C17Rik-201ENSMUST00000129876 2203 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Traf1P39428 Pou2f1-204ENSMUST00000111426 2671 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Traf1P39428 Rplp1-ps1-201ENSMUST00000119410 345 ntBASIC11.93□□□□□ -0.5
Traf1P39428 Gm14699-201ENSMUST00000122340 228 ntBASIC11.93□□□□□ -0.5
Traf1P39428 Gm20091-201ENSMUST00000179683 189 ntBASIC11.93□□□□□ -0.5
Traf1P39428 Zfp655-204ENSMUST00000199003 601 ntTSL 2 BASIC11.93□□□□□ -0.5
Traf1P39428 AC124503.1-201ENSMUST00000218524 526 ntTSL 3 BASIC11.93□□□□□ -0.5
Traf1P39428 AC125409.3-201ENSMUST00000223488 653 ntBASIC11.93□□□□□ -0.5
Traf1P39428 AC157650.1-201ENSMUST00000224582 610 ntBASIC11.93□□□□□ -0.5
Traf1P39428 CT025642.1-201ENSMUST00000224734 1219 ntBASIC11.93□□□□□ -0.5
Traf1P39428 Xlr4b-201ENSMUST00000069077 1200 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Traf1P39428 AU016765-201ENSMUST00000097295 946 ntTSL 2 BASIC11.93□□□□□ -0.5
Traf1P39428 Trim65-202ENSMUST00000106440 4040 ntTSL 5 BASIC11.93□□□□□ -0.5
Traf1P39428 Asap1-202ENSMUST00000110114 4409 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Traf1P39428 Ppp6c-205ENSMUST00000204701 1495 ntTSL 5 BASIC11.93□□□□□ -0.5
Traf1P39428 Sipa1l3-215ENSMUST00000183096 7713 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Traf1P39428 Sipa1l3-201ENSMUST00000085809 7713 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Traf1P39428 Klf10-203ENSMUST00000227920 2144 ntBASIC11.93□□□□□ -0.5
Traf1P39428 Madd-213ENSMUST00000111376 5927 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Traf1P39428 St6galnac2-206ENSMUST00000144398 1683 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Traf1P39428 Dhx34-202ENSMUST00000118795 4076 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Traf1P39428 Txndc16-203ENSMUST00000123879 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Traf1P39428 Rnf2-201ENSMUST00000076110 3160 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Traf1P39428 Myh13-203ENSMUST00000180845 5991 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Traf1P39428 Msh3-202ENSMUST00000185852 3946 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Traf1P39428 Celf2-224ENSMUST00000182879 2223 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Traf1P39428 Mir124a-1hg-201ENSMUST00000180610 4103 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Traf1P39428 Pop1-202ENSMUST00000079028 3275 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 43.1 ms