Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC8.39□□□□□ -1.07
Hmgb3O54879 Myl6-201ENSMUST00000164181 665 ntAPPRIS P2 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC8.39□□□□□ -1.07
Hmgb3O54879 1110036E04Rik-201ENSMUST00000181151 777 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC8.39□□□□□ -1.07
Hmgb3O54879 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC8.39□□□□□ -1.07
Hmgb3O54879 AC154435.1-201ENSMUST00000223938 959 ntBASIC8.39□□□□□ -1.07
Hmgb3O54879 Nme6-201ENSMUST00000035053 1074 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Fkbpl-201ENSMUST00000036720 1270 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Ginm1-202ENSMUST00000065124 300 ntBASIC8.39□□□□□ -1.07
Hmgb3O54879 Gm9899-201ENSMUST00000065519 555 ntBASIC8.39□□□□□ -1.07
Hmgb3O54879 Mrgpra4-201ENSMUST00000087092 1259 ntAPPRIS P1 BASIC8.39□□□□□ -1.07
Hmgb3O54879 Scoc-202ENSMUST00000167525 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Rrh-202ENSMUST00000171313 1759 ntAPPRIS P2 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 P2ry14-202ENSMUST00000091112 1795 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Asb3-201ENSMUST00000020551 3228 ntAPPRIS P2 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Gm43737-201ENSMUST00000199915 2740 ntBASIC8.39□□□□□ -1.07
Hmgb3O54879 Gm14372-201ENSMUST00000125355 2193 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Tmem248-201ENSMUST00000065329 3607 ntAPPRIS P1 TSL 5 BASIC8.39□□□□□ -1.07
Hmgb3O54879 Siglec1-201ENSMUST00000028794 6387 ntAPPRIS P2 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Ctns-201ENSMUST00000006103 2570 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Sntg1-207ENSMUST00000140295 4887 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Crb1-204ENSMUST00000198445 6135 ntAPPRIS ALT2 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Clcc1-202ENSMUST00000106609 2043 ntAPPRIS P3 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Tbp-211ENSMUST00000162505 12794 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Myo1e-201ENSMUST00000034745 4625 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Ppp4r1l-ps-205ENSMUST00000141051 4466 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
Hmgb3O54879 Ash1l-202ENSMUST00000186583 11644 ntAPPRIS P1 TSL 5 BASIC8.38□□□□□ -1.07
Hmgb3O54879 Nwd1-204ENSMUST00000161254 10792 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Fam227a-202ENSMUST00000109646 1896 ntTSL 5 BASIC8.38□□□□□ -1.07
Hmgb3O54879 Gm17141-201ENSMUST00000167578 3148 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Gm40289-201ENSMUST00000201470 2268 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 D630003M21Rik-203ENSMUST00000169335 3457 ntAPPRIS ALT2 TSL 5 BASIC8.38□□□□□ -1.07
Hmgb3O54879 Sipa1l1-201ENSMUST00000053969 7488 ntAPPRIS P3 TSL 5 BASIC8.38□□□□□ -1.07
Hmgb3O54879 Fras1-201ENSMUST00000036019 15848 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Lipg-201ENSMUST00000066532 3787 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Dnajb13-204ENSMUST00000207405 2592 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Atp6v0e2-201ENSMUST00000040361 1789 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Gm5136-201ENSMUST00000218023 1397 ntAPPRIS P1 BASIC8.38□□□□□ -1.07
Hmgb3O54879 Rpa1-201ENSMUST00000000767 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Gm8036-201ENSMUST00000118089 1718 ntBASIC8.38□□□□□ -1.07
Hmgb3O54879 Bpifb2-201ENSMUST00000028983 1730 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Cdca2-205ENSMUST00000150006 3568 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Gabarapl2-201ENSMUST00000034428 1677 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Oc90-202ENSMUST00000079776 1670 ntAPPRIS ALT2 TSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Zfp672-202ENSMUST00000064786 2765 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Nos1-202ENSMUST00000102557 4591 ntAPPRIS ALT2 TSL 5 BASIC8.38□□□□□ -1.07
Hmgb3O54879 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC8.38□□□□□ -1.07
Hmgb3O54879 Gm6506-201ENSMUST00000119775 1136 ntBASIC8.38□□□□□ -1.07
Hmgb3O54879 Gm6425-201ENSMUST00000136332 790 ntBASIC8.38□□□□□ -1.07
Hmgb3O54879 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Gm13709-201ENSMUST00000138573 614 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC8.38□□□□□ -1.07
Hmgb3O54879 Gm26083-201ENSMUST00000157904 193 ntBASIC8.38□□□□□ -1.07
Hmgb3O54879 Gm4982-201ENSMUST00000160440 1098 ntBASIC8.38□□□□□ -1.07
Hmgb3O54879 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Gm20392-201ENSMUST00000173047 701 ntBASIC8.38□□□□□ -1.07
Hmgb3O54879 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC8.38□□□□□ -1.07
Hmgb3O54879 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Gm43634-201ENSMUST00000202671 675 ntTSL 3 BASIC8.38□□□□□ -1.07
Hmgb3O54879 Gm33080-201ENSMUST00000205429 172 ntBASIC8.38□□□□□ -1.07
Hmgb3O54879 Gm45186-201ENSMUST00000206874 478 ntBASIC8.38□□□□□ -1.07
Hmgb3O54879 CT010506.1-201ENSMUST00000223673 349 ntBASIC8.38□□□□□ -1.07
Hmgb3O54879 Gm6781-201ENSMUST00000038304 1242 ntBASIC8.38□□□□□ -1.07
Hmgb3O54879 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Tdpoz3-201ENSMUST00000081780 1098 ntAPPRIS P1 BASIC8.38□□□□□ -1.07
Hmgb3O54879 Gm6040-201ENSMUST00000095430 857 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Gm10775-201ENSMUST00000099425 1203 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Anxa9-204ENSMUST00000164406 1611 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Gm31718-201ENSMUST00000212406 1646 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Washc4-201ENSMUST00000038388 5858 ntAPPRIS P1 TSL 5 BASIC8.38□□□□□ -1.07
Hmgb3O54879 Uqcc1-204ENSMUST00000109636 2633 ntAPPRIS P2 TSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Nadsyn1-201ENSMUST00000033415 2641 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Sncaip-201ENSMUST00000025413 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Acox2-204ENSMUST00000164598 2907 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Gm9271-201ENSMUST00000185988 2580 ntBASIC8.38□□□□□ -1.07
Hmgb3O54879 Samsn1-201ENSMUST00000114239 1890 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Parpbp-201ENSMUST00000048518 3594 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Lin54-202ENSMUST00000123572 4592 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Fam186b-201ENSMUST00000109100 3187 ntAPPRIS P1 TSL 5 BASIC8.38□□□□□ -1.07
Hmgb3O54879 Ptpn20-201ENSMUST00000022508 3153 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 2600014E21Rik-201ENSMUST00000186411 4805 ntTSL 5 BASIC8.38□□□□□ -1.07
Hmgb3O54879 A830018L16Rik-209ENSMUST00000179089 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 AC159819.3-201ENSMUST00000216940 1837 ntBASIC8.38□□□□□ -1.07
Hmgb3O54879 AC123534.1-202ENSMUST00000224256 1837 ntBASIC8.38□□□□□ -1.07
Hmgb3O54879 Adam1a-201ENSMUST00000100757 3496 ntAPPRIS P1 BASIC8.38□□□□□ -1.07
Hmgb3O54879 Msln-201ENSMUST00000075884 2114 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Lpar1-204ENSMUST00000107574 3437 ntAPPRIS P3 TSL 5 BASIC8.38□□□□□ -1.07
Hmgb3O54879 Wdr25-201ENSMUST00000047115 4356 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Gad1-ps-201ENSMUST00000167243 1776 ntBASIC8.38□□□□□ -1.07
Hmgb3O54879 Slc13a5-206ENSMUST00000208912 1751 ntAPPRIS ALT2 TSL 5 BASIC8.38□□□□□ -1.07
Hmgb3O54879 Luzp1-207ENSMUST00000170102 7526 ntAPPRIS P1 TSL 5 BASIC8.38□□□□□ -1.07
Hmgb3O54879 Arhgap25-203ENSMUST00000113637 3671 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Zfp287-203ENSMUST00000128370 2062 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
Hmgb3O54879 Smyd1-202ENSMUST00000114186 3292 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
Hmgb3O54879 Catsperd-201ENSMUST00000112979 2565 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
Hmgb3O54879 Ctage5-220ENSMUST00000177225 2872 ntTSL 5 BASIC8.37□□□□□ -1.07
Retrieved 100 of 76,532 protein–RNA pairs in 64.8 ms