Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC8.46□□□□□ -1.06
Hmgb3O54879 Tmprss13-201ENSMUST00000034597 3245 ntAPPRIS P1 TSL 1 (best) BASIC8.46□□□□□ -1.06
Hmgb3O54879 Gm42608-201ENSMUST00000197563 2018 ntBASIC8.46□□□□□ -1.06
Hmgb3O54879 Acnat2-202ENSMUST00000107698 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC8.46□□□□□ -1.06
Hmgb3O54879 Gm7061-201ENSMUST00000118127 1416 ntBASIC8.46□□□□□ -1.06
Hmgb3O54879 Unc13d-209ENSMUST00000174822 3337 ntAPPRIS P2 TSL 1 (best) BASIC8.46□□□□□ -1.06
Hmgb3O54879 Babam2-201ENSMUST00000063813 1410 ntTSL 1 (best) BASIC8.46□□□□□ -1.06
Hmgb3O54879 Atm-201ENSMUST00000118282 10006 ntAPPRIS P1 TSL 5 BASIC8.46□□□□□ -1.06
Hmgb3O54879 Ephb4-202ENSMUST00000111054 3784 ntTSL 5 BASIC8.45□□□□□ -1.06
Hmgb3O54879 Col10a1-201ENSMUST00000105511 3130 ntAPPRIS P1 TSL 2 BASIC8.45□□□□□ -1.06
Hmgb3O54879 Sun1-201ENSMUST00000058716 4134 ntAPPRIS P3 TSL 1 (best) BASIC8.45□□□□□ -1.06
Hmgb3O54879 Slc4a10-202ENSMUST00000102735 5482 ntAPPRIS P3 TSL 1 (best) BASIC8.45□□□□□ -1.06
Hmgb3O54879 Katnal1-201ENSMUST00000047257 6157 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
Hmgb3O54879 Bet1-201ENSMUST00000049166 1516 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
Hmgb3O54879 Gm1627-201ENSMUST00000188504 2588 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
Hmgb3O54879 Ndn-201ENSMUST00000038775 3694 ntAPPRIS P1 BASIC8.45□□□□□ -1.06
Hmgb3O54879 Mitf-201ENSMUST00000043628 1921 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
Hmgb3O54879 Proser3-201ENSMUST00000062708 1905 ntAPPRIS P2 TSL 5 BASIC8.45□□□□□ -1.06
Hmgb3O54879 Ubox5-201ENSMUST00000028761 3731 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
Hmgb3O54879 Dkk3-201ENSMUST00000033036 3359 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
Hmgb3O54879 Celf2-211ENSMUST00000142941 2338 ntTSL 5 BASIC8.45□□□□□ -1.06
Hmgb3O54879 Gm42962-201ENSMUST00000201966 2325 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
Hmgb3O54879 Gm29684-201ENSMUST00000220248 1982 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
Hmgb3O54879 Pla1a-201ENSMUST00000002926 1972 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
Hmgb3O54879 Tmprss11c-201ENSMUST00000059424 1615 ntAPPRIS P2 TSL 1 (best) BASIC8.45□□□□□ -1.06
Hmgb3O54879 Tgfbi-201ENSMUST00000045173 2714 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
Hmgb3O54879 S100a4-201ENSMUST00000001046 498 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
Hmgb3O54879 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC8.45□□□□□ -1.06
Hmgb3O54879 Mup-ps26-201ENSMUST00000121751 202 ntBASIC8.45□□□□□ -1.06
Hmgb3O54879 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC8.45□□□□□ -1.06
Hmgb3O54879 Gm11706-201ENSMUST00000151282 316 ntTSL 5 BASIC8.45□□□□□ -1.06
Hmgb3O54879 Gm14275-201ENSMUST00000152112 430 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
Hmgb3O54879 Ccdc127-205ENSMUST00000162672 677 ntTSL 3 BASIC8.45□□□□□ -1.06
Hmgb3O54879 Gm17040-202ENSMUST00000170597 889 ntBASIC8.45□□□□□ -1.06
Hmgb3O54879 1700065I16Rik-201ENSMUST00000185277 512 ntBASIC8.45□□□□□ -1.06
Hmgb3O54879 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC8.45□□□□□ -1.06
Hmgb3O54879 Gm43671-201ENSMUST00000200422 433 ntBASIC8.45□□□□□ -1.06
Hmgb3O54879 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC8.45□□□□□ -1.06
Hmgb3O54879 AC153512.3-201ENSMUST00000220426 662 ntTSL 3 BASIC8.45□□□□□ -1.06
Hmgb3O54879 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC8.45□□□□□ -1.06
Hmgb3O54879 AC129975.1-201ENSMUST00000224816 592 ntBASIC8.45□□□□□ -1.06
Hmgb3O54879 Gm1821-202ENSMUST00000227415 750 ntBASIC8.45□□□□□ -1.06
Hmgb3O54879 Mrps11-201ENSMUST00000032840 1056 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
Hmgb3O54879 Tnfsf13b-201ENSMUST00000033892 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC8.45□□□□□ -1.06
Hmgb3O54879 Grb10-202ENSMUST00000109653 2048 ntTSL 5 BASIC8.45□□□□□ -1.06
Hmgb3O54879 Itga1-201ENSMUST00000061673 10967 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
Hmgb3O54879 Gm26724-201ENSMUST00000180434 1650 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
Hmgb3O54879 Foxm1-201ENSMUST00000073316 4652 ntAPPRIS P2 TSL 1 (best) BASIC8.45□□□□□ -1.06
Hmgb3O54879 Washc2-201ENSMUST00000036759 4307 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
Hmgb3O54879 Gm3712-201ENSMUST00000118523 2071 ntBASIC8.45□□□□□ -1.06
Hmgb3O54879 Gm8899-201ENSMUST00000214635 1332 ntBASIC8.45□□□□□ -1.06
Hmgb3O54879 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
Hmgb3O54879 Txndc16-209ENSMUST00000153383 3691 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
Hmgb3O54879 Mmel1-201ENSMUST00000079269 2934 ntAPPRIS ALT2 TSL 5 BASIC8.45□□□□□ -1.06
Hmgb3O54879 Prss47-202ENSMUST00000203968 1353 ntAPPRIS P5 TSL 5 BASIC8.45□□□□□ -1.06
Hmgb3O54879 Gm37446-201ENSMUST00000193015 4136 ntBASIC8.45□□□□□ -1.06
Hmgb3O54879 Gtpbp10-202ENSMUST00000115441 2972 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
Hmgb3O54879 Psat1-201ENSMUST00000025542 2617 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
Hmgb3O54879 Mc3r-201ENSMUST00000038532 2623 ntAPPRIS P1 BASIC8.45□□□□□ -1.06
Hmgb3O54879 Gm43636-201ENSMUST00000201501 2235 ntBASIC8.45□□□□□ -1.06
Hmgb3O54879 Zic3-201ENSMUST00000088627 3949 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
Hmgb3O54879 Ptgr1-201ENSMUST00000030069 2296 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
Hmgb3O54879 Pcdh15-221ENSMUST00000146682 1891 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
Hmgb3O54879 Trpm6-201ENSMUST00000040489 6508 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
Hmgb3O54879 Cfap44-201ENSMUST00000099742 6583 ntAPPRIS P1 TSL 5 BASIC8.45□□□□□ -1.06
Hmgb3O54879 Nr1h4-201ENSMUST00000058126 1964 ntAPPRIS P3 TSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Mpo-203ENSMUST00000121303 2409 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Sema6a-201ENSMUST00000019791 6856 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Atg7-201ENSMUST00000032457 3761 ntAPPRIS P3 TSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Gsdma3-202ENSMUST00000107508 1587 ntAPPRIS ALT2 TSL 5 BASIC8.44□□□□□ -1.06
Hmgb3O54879 Tbx4-202ENSMUST00000108045 2959 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Slc9b2-201ENSMUST00000051849 4818 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Arfgef3-202ENSMUST00000215836 14579 ntAPPRIS P2 TSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Napb-201ENSMUST00000028926 4412 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Htr1a-201ENSMUST00000022235 4484 ntAPPRIS P1 BASIC8.44□□□□□ -1.06
Hmgb3O54879 Gm37307-201ENSMUST00000193663 2621 ntBASIC8.44□□□□□ -1.06
Hmgb3O54879 Serpina3m-201ENSMUST00000101078 1658 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Serpina3m-202ENSMUST00000168797 1659 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Wdr6-201ENSMUST00000068700 4163 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Gm26586-201ENSMUST00000181918 1745 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Rnf111-202ENSMUST00000113595 4735 ntAPPRIS P2 TSL 5 BASIC8.44□□□□□ -1.06
Hmgb3O54879 Arid3b-201ENSMUST00000004780 3785 ntAPPRIS P2 TSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Psmc2-201ENSMUST00000030769 1785 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Urad-201ENSMUST00000100433 766 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC8.44□□□□□ -1.06
Hmgb3O54879 Gm12663-201ENSMUST00000118481 958 ntBASIC8.44□□□□□ -1.06
Hmgb3O54879 Gm11450-201ENSMUST00000121144 333 ntBASIC8.44□□□□□ -1.06
Hmgb3O54879 Uspl1-206ENSMUST00000122160 3827 ntAPPRIS P4 TSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Mir1893-201ENSMUST00000122565 83 ntBASIC8.44□□□□□ -1.06
Hmgb3O54879 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC8.44□□□□□ -1.06
Hmgb3O54879 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC8.44□□□□□ -1.06
Hmgb3O54879 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC8.44□□□□□ -1.06
Hmgb3O54879 Gm11269-201ENSMUST00000157011 595 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Gng2-203ENSMUST00000159073 960 ntAPPRIS P1 TSL 2 BASIC8.44□□□□□ -1.06
Hmgb3O54879 Arid3b-204ENSMUST00000164010 1259 ntTSL 5 BASIC8.44□□□□□ -1.06
Hmgb3O54879 Tro-208ENSMUST00000164071 891 ntAPPRIS ALT2 TSL 5 BASIC8.44□□□□□ -1.06
Hmgb3O54879 Gm27552-201ENSMUST00000183351 62 ntBASIC8.44□□□□□ -1.06
Hmgb3O54879 Gm27844-201ENSMUST00000183613 62 ntBASIC8.44□□□□□ -1.06
Hmgb3O54879 4930517L18Rik-201ENSMUST00000191880 482 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
Hmgb3O54879 Gm37390-201ENSMUST00000192452 872 ntBASIC8.44□□□□□ -1.06
Retrieved 100 of 76,532 protein–RNA pairs in 84.9 ms