Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Bzw1-201ENSMUST00000050552 3876 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hoxd3P09027 Tceal8-204ENSMUST00000163584 2358 ntAPPRIS P1 TSL 3 BASIC8.53□□□□□ -1.04
Hoxd3P09027 Mical2-202ENSMUST00000050149 6669 ntAPPRIS P3 TSL 1 (best) BASIC8.52□□□□□ -1.04
Hoxd3P09027 Siglec1-203ENSMUST00000110227 5790 ntAPPRIS ALT2 TSL 1 (best) BASIC8.52□□□□□ -1.04
Hoxd3P09027 Gm45501-201ENSMUST00000211468 2526 ntBASIC8.52□□□□□ -1.04
Hoxd3P09027 E330023G01Rik-201ENSMUST00000186387 1483 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 Idi1-201ENSMUST00000169314 3027 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 Ung-203ENSMUST00000112275 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 Mlh3-202ENSMUST00000166821 5420 ntAPPRIS P2 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 Socs6-202ENSMUST00000123826 2921 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 Epha6-203ENSMUST00000161358 1356 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 Cbll1-205ENSMUST00000188326 1399 ntTSL 2 BASIC8.52□□□□□ -1.05
Hoxd3P09027 AL645745.1-201ENSMUST00000222202 5348 ntTSL 2 BASIC8.52□□□□□ -1.05
Hoxd3P09027 Olfr140-202ENSMUST00000111506 3449 ntAPPRIS P1 TSL 2 BASIC8.52□□□□□ -1.05
Hoxd3P09027 Lsamp-206ENSMUST00000187695 3411 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 Pla2g4a-202ENSMUST00000111926 2835 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 Itgal-204ENSMUST00000120857 4533 ntAPPRIS ALT2 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 Map4-203ENSMUST00000163979 3320 ntAPPRIS ALT2 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 Akap5-203ENSMUST00000172992 2711 ntAPPRIS ALT2 TSL 3 BASIC8.52□□□□□ -1.05
Hoxd3P09027 Ighv8-11-201ENSMUST00000103536 358 ntAPPRIS P1 BASIC8.52□□□□□ -1.05
Hoxd3P09027 Ccdc163-204ENSMUST00000106464 1213 ntAPPRIS P2 TSL 5 BASIC8.52□□□□□ -1.05
Hoxd3P09027 Scp2-202ENSMUST00000106701 772 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 Zfp189-202ENSMUST00000107696 2965 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 Srpk1-202ENSMUST00000114767 445 ntTSL 3 BASIC8.52□□□□□ -1.05
Hoxd3P09027 Ice2-202ENSMUST00000117246 1201 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 Gm13022-201ENSMUST00000121181 285 ntBASIC8.52□□□□□ -1.05
Hoxd3P09027 B230307C23Rik-202ENSMUST00000122450 1298 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 Gm26254-201ENSMUST00000122491 118 ntBASIC8.52□□□□□ -1.05
Hoxd3P09027 Bach2os-202ENSMUST00000136149 687 ntTSL 2 BASIC8.52□□□□□ -1.05
Hoxd3P09027 E130307A14Rik-203ENSMUST00000136862 608 ntTSL 3 BASIC8.52□□□□□ -1.05
Hoxd3P09027 Gm15911-201ENSMUST00000138992 809 ntTSL 3 BASIC8.52□□□□□ -1.05
Hoxd3P09027 Gm27191-201ENSMUST00000145973 448 ntTSL 3 BASIC8.52□□□□□ -1.05
Hoxd3P09027 Gm17043-201ENSMUST00000164621 1283 ntBASIC8.52□□□□□ -1.05
Hoxd3P09027 Gm5529-201ENSMUST00000165691 891 ntBASIC8.52□□□□□ -1.05
Hoxd3P09027 Gm20822-201ENSMUST00000165756 687 ntAPPRIS P1 BASIC8.52□□□□□ -1.05
Hoxd3P09027 Gm8723-201ENSMUST00000166076 820 ntBASIC8.52□□□□□ -1.05
Hoxd3P09027 Gm44501-201ENSMUST00000167713 1229 ntAPPRIS P1 TSL 2 BASIC8.52□□□□□ -1.05
Hoxd3P09027 Ighv1-76-201ENSMUST00000169155 294 ntAPPRIS P1 BASIC8.52□□□□□ -1.05
Hoxd3P09027 Gm8701-201ENSMUST00000169259 874 ntBASIC8.52□□□□□ -1.05
Hoxd3P09027 Gm20828-201ENSMUST00000170889 687 ntAPPRIS P1 BASIC8.52□□□□□ -1.05
Hoxd3P09027 Ighv1-62-1-202ENSMUST00000171270 90 ntAPPRIS P1 BASIC8.52□□□□□ -1.05
Hoxd3P09027 Malat1-205ENSMUST00000174808 656 ntTSL 2 BASIC8.52□□□□□ -1.05
Hoxd3P09027 1700015G11Rik-201ENSMUST00000180038 397 ntAPPRIS P2 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 A530083I20Rik-202ENSMUST00000180877 1022 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 Gm26944-201ENSMUST00000182265 633 ntTSL 3 BASIC8.52□□□□□ -1.05
Hoxd3P09027 1700065I16Rik-201ENSMUST00000185277 512 ntBASIC8.52□□□□□ -1.05
Hoxd3P09027 Gm28129-201ENSMUST00000186273 537 ntTSL 5 BASIC8.52□□□□□ -1.05
Hoxd3P09027 Gm28186-201ENSMUST00000187447 679 ntBASIC8.52□□□□□ -1.05
Hoxd3P09027 Gm28443-201ENSMUST00000189081 698 ntBASIC8.52□□□□□ -1.05
Hoxd3P09027 Gm20776-201ENSMUST00000189940 700 ntBASIC8.52□□□□□ -1.05
Hoxd3P09027 Gm28893-201ENSMUST00000190951 1108 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 Gm37365-201ENSMUST00000193109 409 ntBASIC8.52□□□□□ -1.05
Hoxd3P09027 5430433H01Rik-201ENSMUST00000193978 542 ntBASIC8.52□□□□□ -1.05
Hoxd3P09027 C230057A21Rik-202ENSMUST00000195781 600 ntTSL 3 BASIC8.52□□□□□ -1.05
Hoxd3P09027 Gm43674-201ENSMUST00000196313 791 ntBASIC8.52□□□□□ -1.05
Hoxd3P09027 Fxr1-206ENSMUST00000198051 2127 ntTSL 5 BASIC8.52□□□□□ -1.05
Hoxd3P09027 Gm43049-201ENSMUST00000198099 462 ntTSL 3 BASIC8.52□□□□□ -1.05
Hoxd3P09027 Gm43667-201ENSMUST00000198616 1095 ntBASIC8.52□□□□□ -1.05
Hoxd3P09027 Pbld1-206ENSMUST00000219687 788 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 Lilrb4a-215ENSMUST00000220182 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 AC144733.1-201ENSMUST00000222893 1289 ntBASIC8.52□□□□□ -1.05
Hoxd3P09027 AC156568.1-201ENSMUST00000223018 712 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 AC154435.1-201ENSMUST00000223938 959 ntBASIC8.52□□□□□ -1.05
Hoxd3P09027 CT009728.1-201ENSMUST00000225228 1050 ntBASIC8.52□□□□□ -1.05
Hoxd3P09027 AC172989.1-201ENSMUST00000226387 513 ntBASIC8.52□□□□□ -1.05
Hoxd3P09027 Gbgt1-201ENSMUST00000028172 1084 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 Rpl37-201ENSMUST00000045356 835 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 Dntt-201ENSMUST00000051806 2128 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 Olfr350-201ENSMUST00000055130 939 ntAPPRIS P1 BASIC8.52□□□□□ -1.05
Hoxd3P09027 Olfr804-201ENSMUST00000077312 945 ntAPPRIS P1 BASIC8.52□□□□□ -1.05
Hoxd3P09027 Krtap19-9b-201ENSMUST00000077715 461 ntAPPRIS P1 BASIC8.52□□□□□ -1.05
Hoxd3P09027 Krtap4-1-201ENSMUST00000081007 1015 ntAPPRIS P1 BASIC8.52□□□□□ -1.05
Hoxd3P09027 Tex10-206ENSMUST00000164866 3203 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 Csk-204ENSMUST00000215396 2390 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 Msh5-201ENSMUST00000007250 2886 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 Igtp-201ENSMUST00000035266 2022 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 Stom-201ENSMUST00000028241 2787 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 Inpp4a-206ENSMUST00000132615 3038 ntTSL 5 BASIC8.52□□□□□ -1.05
Hoxd3P09027 Stx1b-201ENSMUST00000106267 4536 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 4921507G05Rik-201ENSMUST00000181348 1653 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 Aicda-201ENSMUST00000043301 2405 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 Otog-201ENSMUST00000164538 10043 ntAPPRIS P1 TSL 5 BASIC8.52□□□□□ -1.05
Hoxd3P09027 Cyp26b1-202ENSMUST00000168003 4170 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 Cyp26b1-201ENSMUST00000077705 4157 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 Greb1l-201ENSMUST00000048977 8414 ntAPPRIS P1 TSL 5 BASIC8.52□□□□□ -1.05
Hoxd3P09027 Ackr3-201ENSMUST00000065587 3065 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hoxd3P09027 Gm45677-201ENSMUST00000209975 1341 ntBASIC8.52□□□□□ -1.05
Hoxd3P09027 4932431P20Rik-201ENSMUST00000098602 1340 ntBASIC8.52□□□□□ -1.05
Hoxd3P09027 Gm4419-201ENSMUST00000180671 1729 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
Hoxd3P09027 Tspan18-202ENSMUST00000111265 3751 ntAPPRIS P1 TSL 5 BASIC8.51□□□□□ -1.05
Hoxd3P09027 Zmat1-201ENSMUST00000064659 3501 ntAPPRIS P2 TSL 1 (best) BASIC8.51□□□□□ -1.05
Hoxd3P09027 Gm15784-201ENSMUST00000120260 1462 ntBASIC8.51□□□□□ -1.05
Hoxd3P09027 Olfr121-202ENSMUST00000174675 1494 ntAPPRIS P1 TSL 5 BASIC8.51□□□□□ -1.05
Hoxd3P09027 A530053M12Rik-201ENSMUST00000187918 1467 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
Hoxd3P09027 4930480E11Rik-201ENSMUST00000035626 1486 ntAPPRIS P1 BASIC8.51□□□□□ -1.05
Hoxd3P09027 Polr3e-201ENSMUST00000033173 4194 ntAPPRIS P3 TSL 1 (best) BASIC8.51□□□□□ -1.05
Hoxd3P09027 Rxrg-201ENSMUST00000015987 2110 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
Hoxd3P09027 Gm21319-201ENSMUST00000164517 1863 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
Hoxd3P09027 Thg1l-201ENSMUST00000011398 2250 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
Hoxd3P09027 Cenpn-203ENSMUST00000212263 1616 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
Retrieved 100 of 76,532 protein–RNA pairs in 57.2 ms