Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cdc40Q9DC48 Gm43017-201ENSMUST00000198296 752 ntBASIC18.32■□□□□ 0.52
Cdc40Q9DC48 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Cdc40Q9DC48 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cdc40Q9DC48 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cdc40Q9DC48 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cdc40Q9DC48 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Cdc40Q9DC48 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cdc40Q9DC48 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cdc40Q9DC48 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cdc40Q9DC48 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cdc40Q9DC48 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC18.32■□□□□ 0.52
Cdc40Q9DC48 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cdc40Q9DC48 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Cdc40Q9DC48 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cdc40Q9DC48 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cdc40Q9DC48 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cdc40Q9DC48 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Cdc40Q9DC48 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cdc40Q9DC48 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Cdc40Q9DC48 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
Cdc40Q9DC48 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC18.31■□□□□ 0.52
Cdc40Q9DC48 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cdc40Q9DC48 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Cdc40Q9DC48 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
Cdc40Q9DC48 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC18.31■□□□□ 0.52
Cdc40Q9DC48 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cdc40Q9DC48 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC18.31■□□□□ 0.52
Cdc40Q9DC48 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Cdc40Q9DC48 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cdc40Q9DC48 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Cdc40Q9DC48 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Cdc40Q9DC48 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cdc40Q9DC48 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cdc40Q9DC48 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC18.3■□□□□ 0.52
Cdc40Q9DC48 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Cdc40Q9DC48 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cdc40Q9DC48 Gm5576-201ENSMUST00000075809 1236 ntBASIC18.3■□□□□ 0.52
Cdc40Q9DC48 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cdc40Q9DC48 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Cdc40Q9DC48 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC18.3■□□□□ 0.52
Cdc40Q9DC48 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cdc40Q9DC48 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cdc40Q9DC48 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Cdc40Q9DC48 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC18.29■□□□□ 0.52
Cdc40Q9DC48 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC18.29■□□□□ 0.52
Cdc40Q9DC48 Gm8493-201ENSMUST00000196881 489 ntBASIC18.29■□□□□ 0.52
Cdc40Q9DC48 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC18.29■□□□□ 0.52
Cdc40Q9DC48 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Cdc40Q9DC48 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cdc40Q9DC48 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cdc40Q9DC48 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cdc40Q9DC48 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Cdc40Q9DC48 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC18.29■□□□□ 0.52
Cdc40Q9DC48 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cdc40Q9DC48 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cdc40Q9DC48 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
Cdc40Q9DC48 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Cdc40Q9DC48 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
Cdc40Q9DC48 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cdc40Q9DC48 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cdc40Q9DC48 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Cdc40Q9DC48 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
Cdc40Q9DC48 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Cdc40Q9DC48 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Cdc40Q9DC48 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cdc40Q9DC48 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cdc40Q9DC48 AC152827.1-201ENSMUST00000221143 2189 ntBASIC18.28■□□□□ 0.52
Cdc40Q9DC48 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
Cdc40Q9DC48 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cdc40Q9DC48 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cdc40Q9DC48 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Cdc40Q9DC48 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cdc40Q9DC48 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Cdc40Q9DC48 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC18.27■□□□□ 0.52
Cdc40Q9DC48 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cdc40Q9DC48 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Cdc40Q9DC48 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC18.27■□□□□ 0.52
Cdc40Q9DC48 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Cdc40Q9DC48 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
Cdc40Q9DC48 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Cdc40Q9DC48 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC18.26■□□□□ 0.51
Cdc40Q9DC48 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cdc40Q9DC48 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cdc40Q9DC48 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cdc40Q9DC48 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cdc40Q9DC48 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cdc40Q9DC48 AC166356.1-201ENSMUST00000228236 1426 ntBASIC18.26■□□□□ 0.51
Cdc40Q9DC48 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Cdc40Q9DC48 Gm43530-201ENSMUST00000195920 274 ntBASIC18.26■□□□□ 0.51
Cdc40Q9DC48 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cdc40Q9DC48 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cdc40Q9DC48 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Cdc40Q9DC48 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cdc40Q9DC48 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cdc40Q9DC48 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Cdc40Q9DC48 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Cdc40Q9DC48 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cdc40Q9DC48 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cdc40Q9DC48 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms