Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ddx56Q9D0R4 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ddx56Q9D0R4 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ddx56Q9D0R4 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC20.86■□□□□ 0.93
Ddx56Q9D0R4 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC20.86■□□□□ 0.93
Ddx56Q9D0R4 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddx56Q9D0R4 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
Ddx56Q9D0R4 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddx56Q9D0R4 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddx56Q9D0R4 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddx56Q9D0R4 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddx56Q9D0R4 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddx56Q9D0R4 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddx56Q9D0R4 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ddx56Q9D0R4 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ddx56Q9D0R4 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Ddx56Q9D0R4 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Ddx56Q9D0R4 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC20.84■□□□□ 0.93
Ddx56Q9D0R4 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Ddx56Q9D0R4 Gm9207-201ENSMUST00000198773 1115 ntBASIC20.84■□□□□ 0.93
Ddx56Q9D0R4 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ddx56Q9D0R4 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Ddx56Q9D0R4 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ddx56Q9D0R4 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ddx56Q9D0R4 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Ddx56Q9D0R4 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ddx56Q9D0R4 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Ddx56Q9D0R4 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Ddx56Q9D0R4 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC20.83■□□□□ 0.93
Ddx56Q9D0R4 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
Ddx56Q9D0R4 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ddx56Q9D0R4 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Ddx56Q9D0R4 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ddx56Q9D0R4 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC20.83■□□□□ 0.93
Ddx56Q9D0R4 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Ddx56Q9D0R4 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
Ddx56Q9D0R4 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Ddx56Q9D0R4 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
Ddx56Q9D0R4 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Ddx56Q9D0R4 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Ddx56Q9D0R4 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ddx56Q9D0R4 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ddx56Q9D0R4 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ddx56Q9D0R4 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Ddx56Q9D0R4 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC20.82■□□□□ 0.92
Ddx56Q9D0R4 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC20.82■□□□□ 0.92
Ddx56Q9D0R4 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Ddx56Q9D0R4 Gm6085-201ENSMUST00000182774 1470 ntBASIC20.81■□□□□ 0.92
Ddx56Q9D0R4 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ddx56Q9D0R4 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ddx56Q9D0R4 Cdkn3-203ENSMUST00000227149 1952 ntBASIC20.81■□□□□ 0.92
Ddx56Q9D0R4 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ddx56Q9D0R4 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ddx56Q9D0R4 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ddx56Q9D0R4 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Ddx56Q9D0R4 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Ddx56Q9D0R4 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
Ddx56Q9D0R4 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Ddx56Q9D0R4 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC20.8■□□□□ 0.92
Ddx56Q9D0R4 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Ddx56Q9D0R4 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ddx56Q9D0R4 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC20.8■□□□□ 0.92
Ddx56Q9D0R4 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Ddx56Q9D0R4 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC20.79■□□□□ 0.92
Ddx56Q9D0R4 Notumos-201ENSMUST00000151998 2659 ntBASIC20.79■□□□□ 0.92
Ddx56Q9D0R4 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Ddx56Q9D0R4 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC20.79■□□□□ 0.92
Ddx56Q9D0R4 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC20.79■□□□□ 0.92
Ddx56Q9D0R4 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC20.79■□□□□ 0.92
Ddx56Q9D0R4 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC20.79■□□□□ 0.92
Ddx56Q9D0R4 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ddx56Q9D0R4 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Ddx56Q9D0R4 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC20.78■□□□□ 0.92
Ddx56Q9D0R4 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Ddx56Q9D0R4 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ddx56Q9D0R4 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ddx56Q9D0R4 Gm6802-201ENSMUST00000167843 1983 ntBASIC20.78■□□□□ 0.92
Ddx56Q9D0R4 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Ddx56Q9D0R4 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC20.78■□□□□ 0.92
Ddx56Q9D0R4 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ddx56Q9D0R4 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ddx56Q9D0R4 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Ddx56Q9D0R4 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ddx56Q9D0R4 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Ddx56Q9D0R4 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Ddx56Q9D0R4 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ddx56Q9D0R4 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Ddx56Q9D0R4 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Ddx56Q9D0R4 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
Ddx56Q9D0R4 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ddx56Q9D0R4 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Ddx56Q9D0R4 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ddx56Q9D0R4 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC20.76■□□□□ 0.91
Ddx56Q9D0R4 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
Ddx56Q9D0R4 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ddx56Q9D0R4 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ddx56Q9D0R4 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ddx56Q9D0R4 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ddx56Q9D0R4 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC20.75■□□□□ 0.91
Ddx56Q9D0R4 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 14.9 ms