Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Limch1Q3UH68 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Limch1Q3UH68 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Limch1Q3UH68 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
Limch1Q3UH68 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
Limch1Q3UH68 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
Limch1Q3UH68 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Limch1Q3UH68 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Limch1Q3UH68 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
Limch1Q3UH68 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC23.32■■□□□ 1.32
Limch1Q3UH68 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Limch1Q3UH68 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
Limch1Q3UH68 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC23.32■■□□□ 1.32
Limch1Q3UH68 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
Limch1Q3UH68 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Limch1Q3UH68 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Limch1Q3UH68 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
Limch1Q3UH68 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Limch1Q3UH68 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Limch1Q3UH68 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Limch1Q3UH68 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
Limch1Q3UH68 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Limch1Q3UH68 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
Limch1Q3UH68 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Limch1Q3UH68 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC23.31■■□□□ 1.32
Limch1Q3UH68 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC23.31■■□□□ 1.32
Limch1Q3UH68 Gm10657-201ENSMUST00000193528 1031 ntBASIC23.31■■□□□ 1.32
Limch1Q3UH68 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Limch1Q3UH68 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Limch1Q3UH68 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Limch1Q3UH68 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Limch1Q3UH68 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Limch1Q3UH68 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Limch1Q3UH68 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Limch1Q3UH68 Gm43530-201ENSMUST00000195920 274 ntBASIC23.3■■□□□ 1.32
Limch1Q3UH68 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Limch1Q3UH68 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC23.29■■□□□ 1.32
Limch1Q3UH68 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
Limch1Q3UH68 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Limch1Q3UH68 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC23.29■■□□□ 1.32
Limch1Q3UH68 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Limch1Q3UH68 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Limch1Q3UH68 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC23.29■■□□□ 1.32
Limch1Q3UH68 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Limch1Q3UH68 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Limch1Q3UH68 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Limch1Q3UH68 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Limch1Q3UH68 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC23.28■■□□□ 1.32
Limch1Q3UH68 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Limch1Q3UH68 Gm6139-201ENSMUST00000079261 882 ntBASIC23.28■■□□□ 1.32
Limch1Q3UH68 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Limch1Q3UH68 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Limch1Q3UH68 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
Limch1Q3UH68 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Limch1Q3UH68 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
Limch1Q3UH68 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Limch1Q3UH68 Flvcr1-202ENSMUST00000191946 1216 ntBASIC23.27■■□□□ 1.32
Limch1Q3UH68 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
Limch1Q3UH68 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
Limch1Q3UH68 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
Limch1Q3UH68 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Limch1Q3UH68 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC23.27■■□□□ 1.31
Limch1Q3UH68 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.31
Limch1Q3UH68 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
Limch1Q3UH68 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
Limch1Q3UH68 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC23.26■■□□□ 1.31
Limch1Q3UH68 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Limch1Q3UH68 Gm8495-201ENSMUST00000188740 694 ntBASIC23.26■■□□□ 1.31
Limch1Q3UH68 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Limch1Q3UH68 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC23.26■■□□□ 1.31
Limch1Q3UH68 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Limch1Q3UH68 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Limch1Q3UH68 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC23.25■■□□□ 1.31
Limch1Q3UH68 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Limch1Q3UH68 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
Limch1Q3UH68 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Limch1Q3UH68 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Limch1Q3UH68 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Limch1Q3UH68 Gm2011-201ENSMUST00000203124 1263 ntBASIC23.25■■□□□ 1.31
Limch1Q3UH68 Slc35b2-207ENSMUST00000226086 850 ntBASIC23.25■■□□□ 1.31
Limch1Q3UH68 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Limch1Q3UH68 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
Limch1Q3UH68 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC23.25■■□□□ 1.31
Limch1Q3UH68 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Limch1Q3UH68 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Limch1Q3UH68 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
Limch1Q3UH68 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC23.24■■□□□ 1.31
Limch1Q3UH68 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Limch1Q3UH68 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Limch1Q3UH68 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
Limch1Q3UH68 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC23.24■■□□□ 1.31
Limch1Q3UH68 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
Limch1Q3UH68 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Limch1Q3UH68 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
Limch1Q3UH68 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Limch1Q3UH68 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Limch1Q3UH68 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC23.23■■□□□ 1.31
Limch1Q3UH68 Gm18284-201ENSMUST00000172604 624 ntBASIC23.23■■□□□ 1.31
Limch1Q3UH68 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Limch1Q3UH68 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms