Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Col9a1Q05722 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Col9a1Q05722 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC19.71■□□□□ 0.75
Col9a1Q05722 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col9a1Q05722 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col9a1Q05722 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col9a1Q05722 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col9a1Q05722 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC19.7■□□□□ 0.74
Col9a1Q05722 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col9a1Q05722 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC19.7■□□□□ 0.74
Col9a1Q05722 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC19.7■□□□□ 0.74
Col9a1Q05722 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col9a1Q05722 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col9a1Q05722 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col9a1Q05722 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC19.69■□□□□ 0.74
Col9a1Q05722 Gm6420-201ENSMUST00000193885 723 ntBASIC19.69■□□□□ 0.74
Col9a1Q05722 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC19.69■□□□□ 0.74
Col9a1Q05722 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col9a1Q05722 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC19.69■□□□□ 0.74
Col9a1Q05722 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col9a1Q05722 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col9a1Q05722 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Col9a1Q05722 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Col9a1Q05722 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Col9a1Q05722 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
Col9a1Q05722 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Col9a1Q05722 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col9a1Q05722 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Col9a1Q05722 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col9a1Q05722 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col9a1Q05722 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col9a1Q05722 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Col9a1Q05722 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC19.67■□□□□ 0.74
Col9a1Q05722 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col9a1Q05722 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col9a1Q05722 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col9a1Q05722 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Col9a1Q05722 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Col9a1Q05722 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col9a1Q05722 Gm20472-201ENSMUST00000174403 1240 ntBASIC19.66■□□□□ 0.74
Col9a1Q05722 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col9a1Q05722 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col9a1Q05722 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Col9a1Q05722 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col9a1Q05722 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col9a1Q05722 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Col9a1Q05722 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col9a1Q05722 AC153881.1-201ENSMUST00000214448 284 ntBASIC19.65■□□□□ 0.74
Col9a1Q05722 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col9a1Q05722 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col9a1Q05722 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Col9a1Q05722 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col9a1Q05722 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col9a1Q05722 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
Col9a1Q05722 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col9a1Q05722 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.73
Col9a1Q05722 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC19.64■□□□□ 0.73
Col9a1Q05722 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.73
Col9a1Q05722 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col9a1Q05722 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col9a1Q05722 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Col9a1Q05722 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Col9a1Q05722 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col9a1Q05722 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Col9a1Q05722 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC19.63■□□□□ 0.73
Col9a1Q05722 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Col9a1Q05722 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Col9a1Q05722 AC153890.1-201ENSMUST00000220021 2469 ntBASIC19.63■□□□□ 0.73
Col9a1Q05722 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col9a1Q05722 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col9a1Q05722 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col9a1Q05722 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Col9a1Q05722 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col9a1Q05722 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Col9a1Q05722 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Col9a1Q05722 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC19.62■□□□□ 0.73
Col9a1Q05722 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Col9a1Q05722 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col9a1Q05722 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Col9a1Q05722 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC19.62■□□□□ 0.73
Col9a1Q05722 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col9a1Q05722 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col9a1Q05722 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col9a1Q05722 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col9a1Q05722 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col9a1Q05722 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Col9a1Q05722 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col9a1Q05722 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Col9a1Q05722 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Col9a1Q05722 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col9a1Q05722 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col9a1Q05722 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Col9a1Q05722 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC19.6■□□□□ 0.73
Col9a1Q05722 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col9a1Q05722 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
Col9a1Q05722 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC19.6■□□□□ 0.73
Col9a1Q05722 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Col9a1Q05722 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC19.6■□□□□ 0.73
Col9a1Q05722 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col9a1Q05722 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms