Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.07
Hmgb1P63158 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
Hmgb1P63158 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Hmgb1P63158 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Hmgb1P63158 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Hmgb1P63158 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Hmgb1P63158 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Hmgb1P63158 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC21.76■■□□□ 1.07
Hmgb1P63158 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC21.76■■□□□ 1.07
Hmgb1P63158 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
Hmgb1P63158 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Hmgb1P63158 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Hmgb1P63158 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Hmgb1P63158 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC21.75■■□□□ 1.07
Hmgb1P63158 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Hmgb1P63158 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC21.75■■□□□ 1.07
Hmgb1P63158 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Hmgb1P63158 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Hmgb1P63158 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Hmgb1P63158 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Hmgb1P63158 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
Hmgb1P63158 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Hmgb1P63158 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
Hmgb1P63158 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Hmgb1P63158 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Hmgb1P63158 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Hmgb1P63158 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
Hmgb1P63158 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Hmgb1P63158 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Hmgb1P63158 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
Hmgb1P63158 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Hmgb1P63158 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Hmgb1P63158 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Hmgb1P63158 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Hmgb1P63158 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
Hmgb1P63158 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Hmgb1P63158 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Hmgb1P63158 Golph3-202ENSMUST00000226517 2359 ntBASIC21.73■■□□□ 1.07
Hmgb1P63158 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Hmgb1P63158 Gm9959-201ENSMUST00000068277 390 ntBASIC21.73■■□□□ 1.07
Hmgb1P63158 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Hmgb1P63158 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Hmgb1P63158 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
Hmgb1P63158 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Hmgb1P63158 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
Hmgb1P63158 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Hmgb1P63158 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
Hmgb1P63158 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
Hmgb1P63158 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC21.72■■□□□ 1.07
Hmgb1P63158 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Hmgb1P63158 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Hmgb1P63158 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Hmgb1P63158 Gm6802-201ENSMUST00000167843 1983 ntBASIC21.72■■□□□ 1.07
Hmgb1P63158 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Hmgb1P63158 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC21.71■■□□□ 1.07
Hmgb1P63158 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC21.71■■□□□ 1.07
Hmgb1P63158 Gm22238-201ENSMUST00000175222 88 ntBASIC21.71■■□□□ 1.07
Hmgb1P63158 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Hmgb1P63158 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC21.71■■□□□ 1.07
Hmgb1P63158 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Hmgb1P63158 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Hmgb1P63158 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
Hmgb1P63158 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Hmgb1P63158 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Hmgb1P63158 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
Hmgb1P63158 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC21.7■■□□□ 1.06
Hmgb1P63158 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Hmgb1P63158 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Hmgb1P63158 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Hmgb1P63158 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Hmgb1P63158 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Hmgb1P63158 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
Hmgb1P63158 Cdkn3-203ENSMUST00000227149 1952 ntBASIC21.7■■□□□ 1.06
Hmgb1P63158 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Hmgb1P63158 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Hmgb1P63158 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC21.69■■□□□ 1.06
Hmgb1P63158 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Hmgb1P63158 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Hmgb1P63158 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Hmgb1P63158 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC21.69■■□□□ 1.06
Hmgb1P63158 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
Hmgb1P63158 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC21.68■■□□□ 1.06
Hmgb1P63158 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC21.68■■□□□ 1.06
Hmgb1P63158 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Hmgb1P63158 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
Hmgb1P63158 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Hmgb1P63158 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Hmgb1P63158 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
Hmgb1P63158 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Hmgb1P63158 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Hmgb1P63158 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Hmgb1P63158 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Hmgb1P63158 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Hmgb1P63158 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
Hmgb1P63158 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC21.67■■□□□ 1.06
Hmgb1P63158 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC21.67■■□□□ 1.06
Hmgb1P63158 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC21.67■■□□□ 1.06
Hmgb1P63158 Krt8-ps-201ENSMUST00000208495 945 ntBASIC21.67■■□□□ 1.06
Hmgb1P63158 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC21.67■■□□□ 1.06
Hmgb1P63158 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 12.2 ms