Protein–RNA interactions for Protein: P40224

Cxcl12, Stromal cell-derived factor 1, mousemouse

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cxcl12P40224 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Cxcl12P40224 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Cxcl12P40224 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cxcl12P40224 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cxcl12P40224 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cxcl12P40224 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cxcl12P40224 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cxcl12P40224 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cxcl12P40224 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
Cxcl12P40224 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC20.64■□□□□ 0.89
Cxcl12P40224 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC20.64■□□□□ 0.89
Cxcl12P40224 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
Cxcl12P40224 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cxcl12P40224 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cxcl12P40224 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cxcl12P40224 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cxcl12P40224 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cxcl12P40224 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cxcl12P40224 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cxcl12P40224 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cxcl12P40224 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Cxcl12P40224 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Cxcl12P40224 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Cxcl12P40224 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC20.63■□□□□ 0.89
Cxcl12P40224 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Cxcl12P40224 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cxcl12P40224 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC20.63■□□□□ 0.89
Cxcl12P40224 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Cxcl12P40224 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cxcl12P40224 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cxcl12P40224 Gm5913-201ENSMUST00000119397 1399 ntBASIC20.62■□□□□ 0.89
Cxcl12P40224 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Cxcl12P40224 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC20.62■□□□□ 0.89
Cxcl12P40224 H3f3aos-201ENSMUST00000097448 2905 ntBASIC20.62■□□□□ 0.89
Cxcl12P40224 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cxcl12P40224 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cxcl12P40224 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cxcl12P40224 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cxcl12P40224 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cxcl12P40224 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cxcl12P40224 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Cxcl12P40224 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cxcl12P40224 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cxcl12P40224 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC20.6■□□□□ 0.89
Cxcl12P40224 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cxcl12P40224 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Cxcl12P40224 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC20.6■□□□□ 0.89
Cxcl12P40224 Gm37856-201ENSMUST00000191634 999 ntBASIC20.6■□□□□ 0.89
Cxcl12P40224 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC20.6■□□□□ 0.89
Cxcl12P40224 AC135963.1-201ENSMUST00000211640 717 ntBASIC20.6■□□□□ 0.89
Cxcl12P40224 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Cxcl12P40224 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cxcl12P40224 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cxcl12P40224 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cxcl12P40224 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cxcl12P40224 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cxcl12P40224 Gm13146-201ENSMUST00000118508 780 ntBASIC20.59■□□□□ 0.89
Cxcl12P40224 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC20.59■□□□□ 0.89
Cxcl12P40224 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cxcl12P40224 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Cxcl12P40224 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cxcl12P40224 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cxcl12P40224 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cxcl12P40224 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cxcl12P40224 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC20.58■□□□□ 0.89
Cxcl12P40224 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cxcl12P40224 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
Cxcl12P40224 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
Cxcl12P40224 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cxcl12P40224 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.89
Cxcl12P40224 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cxcl12P40224 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC20.58■□□□□ 0.89
Cxcl12P40224 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cxcl12P40224 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cxcl12P40224 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Cxcl12P40224 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cxcl12P40224 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
Cxcl12P40224 Gm6420-201ENSMUST00000193885 723 ntBASIC20.57■□□□□ 0.88
Cxcl12P40224 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cxcl12P40224 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cxcl12P40224 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cxcl12P40224 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cxcl12P40224 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC20.56■□□□□ 0.88
Cxcl12P40224 Trmt13-210ENSMUST00000198454 880 ntBASIC20.56■□□□□ 0.88
Cxcl12P40224 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cxcl12P40224 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cxcl12P40224 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Cxcl12P40224 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cxcl12P40224 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Cxcl12P40224 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cxcl12P40224 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Cxcl12P40224 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Cxcl12P40224 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cxcl12P40224 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cxcl12P40224 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Cxcl12P40224 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cxcl12P40224 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cxcl12P40224 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cxcl12P40224 Gm13181-201ENSMUST00000120117 1069 ntBASIC20.55■□□□□ 0.88
Cxcl12P40224 Gm6211-202ENSMUST00000167849 925 ntBASIC20.55■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms