Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Hmgb3O54879 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Hmgb3O54879 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Hmgb3O54879 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Hmgb3O54879 Gm9806-201ENSMUST00000051080 552 ntBASIC16.45■□□□□ 0.22
Hmgb3O54879 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Hmgb3O54879 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Hmgb3O54879 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Hmgb3O54879 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Hmgb3O54879 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Hmgb3O54879 Gm37035-201ENSMUST00000194809 2148 ntBASIC16.45■□□□□ 0.22
Hmgb3O54879 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Hmgb3O54879 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Hmgb3O54879 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Hmgb3O54879 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Hmgb3O54879 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Hmgb3O54879 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Hmgb3O54879 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Hmgb3O54879 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Hmgb3O54879 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Hmgb3O54879 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Hmgb3O54879 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Hmgb3O54879 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Hmgb3O54879 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Hmgb3O54879 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC16.44■□□□□ 0.22
Hmgb3O54879 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
Hmgb3O54879 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Hmgb3O54879 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Hmgb3O54879 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Hmgb3O54879 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Hmgb3O54879 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Hmgb3O54879 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb3O54879 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC16.43■□□□□ 0.22
Hmgb3O54879 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb3O54879 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb3O54879 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb3O54879 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb3O54879 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC16.43■□□□□ 0.22
Hmgb3O54879 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Hmgb3O54879 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb3O54879 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb3O54879 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC16.43■□□□□ 0.22
Hmgb3O54879 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb3O54879 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb3O54879 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb3O54879 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb3O54879 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb3O54879 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Hmgb3O54879 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Hmgb3O54879 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Hmgb3O54879 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Hmgb3O54879 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Hmgb3O54879 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Hmgb3O54879 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC16.42■□□□□ 0.22
Hmgb3O54879 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC16.42■□□□□ 0.22
Hmgb3O54879 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Hmgb3O54879 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Hmgb3O54879 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Hmgb3O54879 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Hmgb3O54879 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Hmgb3O54879 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Hmgb3O54879 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Hmgb3O54879 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Hmgb3O54879 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Hmgb3O54879 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Hmgb3O54879 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Hmgb3O54879 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Hmgb3O54879 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Hmgb3O54879 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Hmgb3O54879 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Hmgb3O54879 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC16.4■□□□□ 0.22
Hmgb3O54879 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC16.4■□□□□ 0.22
Hmgb3O54879 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Hmgb3O54879 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Hmgb3O54879 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Hmgb3O54879 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Hmgb3O54879 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Hmgb3O54879 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.22
Hmgb3O54879 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Hmgb3O54879 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Hmgb3O54879 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Hmgb3O54879 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Hmgb3O54879 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Hmgb3O54879 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Hmgb3O54879 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Hmgb3O54879 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Hmgb3O54879 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Hmgb3O54879 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Hmgb3O54879 Hsf1-204ENSMUST00000226872 2104 ntBASIC16.39■□□□□ 0.21
Hmgb3O54879 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Hmgb3O54879 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Hmgb3O54879 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Hmgb3O54879 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Hmgb3O54879 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC16.38■□□□□ 0.21
Hmgb3O54879 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Hmgb3O54879 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Hmgb3O54879 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Hmgb3O54879 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Hmgb3O54879 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Hmgb3O54879 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms