Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col6a3E9PWQ3 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col6a3E9PWQ3 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
Col6a3E9PWQ3 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Col6a3E9PWQ3 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC20.34■□□□□ 0.85
Col6a3E9PWQ3 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC20.34■□□□□ 0.85
Col6a3E9PWQ3 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col6a3E9PWQ3 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Col6a3E9PWQ3 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
Col6a3E9PWQ3 Gm6659-201ENSMUST00000174752 547 ntBASIC20.33■□□□□ 0.85
Col6a3E9PWQ3 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Col6a3E9PWQ3 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Col6a3E9PWQ3 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Col6a3E9PWQ3 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Col6a3E9PWQ3 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
Col6a3E9PWQ3 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Col6a3E9PWQ3 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Col6a3E9PWQ3 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC20.33■□□□□ 0.84
Col6a3E9PWQ3 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
Col6a3E9PWQ3 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Col6a3E9PWQ3 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.84
Col6a3E9PWQ3 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC20.33■□□□□ 0.84
Col6a3E9PWQ3 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Col6a3E9PWQ3 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Col6a3E9PWQ3 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Col6a3E9PWQ3 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Col6a3E9PWQ3 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Col6a3E9PWQ3 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col6a3E9PWQ3 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col6a3E9PWQ3 Gm20472-201ENSMUST00000174403 1240 ntBASIC20.32■□□□□ 0.84
Col6a3E9PWQ3 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC20.32■□□□□ 0.84
Col6a3E9PWQ3 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Col6a3E9PWQ3 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col6a3E9PWQ3 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Col6a3E9PWQ3 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC20.31■□□□□ 0.84
Col6a3E9PWQ3 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Col6a3E9PWQ3 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col6a3E9PWQ3 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Col6a3E9PWQ3 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Col6a3E9PWQ3 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col6a3E9PWQ3 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Col6a3E9PWQ3 Gm44672-201ENSMUST00000206944 1098 ntBASIC20.31■□□□□ 0.84
Col6a3E9PWQ3 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC20.31■□□□□ 0.84
Col6a3E9PWQ3 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col6a3E9PWQ3 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col6a3E9PWQ3 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Col6a3E9PWQ3 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col6a3E9PWQ3 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC20.3■□□□□ 0.84
Col6a3E9PWQ3 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
Col6a3E9PWQ3 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC20.3■□□□□ 0.84
Col6a3E9PWQ3 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col6a3E9PWQ3 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col6a3E9PWQ3 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
Col6a3E9PWQ3 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Col6a3E9PWQ3 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col6a3E9PWQ3 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col6a3E9PWQ3 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col6a3E9PWQ3 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col6a3E9PWQ3 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC20.29■□□□□ 0.84
Col6a3E9PWQ3 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col6a3E9PWQ3 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col6a3E9PWQ3 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col6a3E9PWQ3 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col6a3E9PWQ3 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC20.28■□□□□ 0.84
Col6a3E9PWQ3 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC20.28■□□□□ 0.84
Col6a3E9PWQ3 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Col6a3E9PWQ3 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col6a3E9PWQ3 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Col6a3E9PWQ3 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col6a3E9PWQ3 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Col6a3E9PWQ3 Gm37563-201ENSMUST00000192580 1513 ntBASIC20.28■□□□□ 0.84
Col6a3E9PWQ3 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col6a3E9PWQ3 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col6a3E9PWQ3 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col6a3E9PWQ3 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Col6a3E9PWQ3 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col6a3E9PWQ3 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col6a3E9PWQ3 AC154649.1-201ENSMUST00000227392 384 ntBASIC20.27■□□□□ 0.84
Col6a3E9PWQ3 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col6a3E9PWQ3 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC20.27■□□□□ 0.84
Col6a3E9PWQ3 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Col6a3E9PWQ3 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC20.27■□□□□ 0.84
Col6a3E9PWQ3 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Col6a3E9PWQ3 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Col6a3E9PWQ3 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col6a3E9PWQ3 AC137127.1-201ENSMUST00000213466 1078 ntBASIC20.26■□□□□ 0.83
Col6a3E9PWQ3 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col6a3E9PWQ3 Gm10167-201ENSMUST00000150411 1479 ntBASIC20.26■□□□□ 0.83
Col6a3E9PWQ3 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col6a3E9PWQ3 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col6a3E9PWQ3 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
Col6a3E9PWQ3 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Col6a3E9PWQ3 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC20.26■□□□□ 0.83
Col6a3E9PWQ3 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Col6a3E9PWQ3 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col6a3E9PWQ3 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col6a3E9PWQ3 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col6a3E9PWQ3 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Col6a3E9PWQ3 AC153890.1-201ENSMUST00000220021 2469 ntBASIC20.25■□□□□ 0.83
Col6a3E9PWQ3 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 20 ms