Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Nfya-201ENSMUST00000046719 3645 ntAPPRIS ALT1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Traf1P39428 Agrn-203ENSMUST00000105575 7262 ntTSL 5 BASIC12.12□□□□□ -0.47
Traf1P39428 Ppp1r12a-205ENSMUST00000219263 3355 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Traf1P39428 Gm8725-201ENSMUST00000221829 1333 ntBASIC12.11□□□□□ -0.47
Traf1P39428 Trim34b-202ENSMUST00000180136 1535 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Traf1P39428 Galm-201ENSMUST00000039205 2314 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Traf1P39428 Sla2-202ENSMUST00000109561 2634 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Traf1P39428 Cap1-201ENSMUST00000069533 2620 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Traf1P39428 Uimc1-204ENSMUST00000127195 2936 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Traf1P39428 AC154528.2-201ENSMUST00000228432 3023 ntBASIC12.11□□□□□ -0.47
Traf1P39428 Dclk2-202ENSMUST00000191752 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Traf1P39428 Nup210-202ENSMUST00000113509 6893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Traf1P39428 Olfr1349-206ENSMUST00000213656 4492 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Traf1P39428 Grik1-201ENSMUST00000023652 3554 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Traf1P39428 Alas1-202ENSMUST00000112524 3089 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Traf1P39428 Nin-201ENSMUST00000021468 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Traf1P39428 Mcf2l-217ENSMUST00000145067 5313 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Traf1P39428 Ctss-201ENSMUST00000015667 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Traf1P39428 Upp1-202ENSMUST00000101525 1157 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Traf1P39428 Sfi1-204ENSMUST00000118627 831 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Traf1P39428 Gm14232-201ENSMUST00000137176 446 ntTSL 3 BASIC12.11□□□□□ -0.47
Traf1P39428 Ttc39b-206ENSMUST00000148811 727 ntTSL 3 BASIC12.11□□□□□ -0.47
Traf1P39428 Gm23675-201ENSMUST00000157311 125 ntBASIC12.11□□□□□ -0.47
Traf1P39428 Mrto4-ps2-201ENSMUST00000164169 549 ntBASIC12.11□□□□□ -0.47
Traf1P39428 Vmn2r-ps13-201ENSMUST00000176920 606 ntBASIC12.11□□□□□ -0.47
Traf1P39428 Gm29595-202ENSMUST00000187954 466 ntTSL 3 BASIC12.11□□□□□ -0.47
Traf1P39428 Gm38321-201ENSMUST00000195053 235 ntBASIC12.11□□□□□ -0.47
Traf1P39428 Ghrl-203ENSMUST00000203588 237 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Traf1P39428 Gm44953-201ENSMUST00000208745 1286 ntBASIC12.11□□□□□ -0.47
Traf1P39428 Timm9-210ENSMUST00000221892 734 ntTSL 5 BASIC12.11□□□□□ -0.47
Traf1P39428 Slc23a2-201ENSMUST00000028815 6364 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Traf1P39428 Ptma-201ENSMUST00000045897 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Traf1P39428 Olfr63-201ENSMUST00000067840 955 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
Traf1P39428 Prok2-201ENSMUST00000008273 594 ntTSL 3 BASIC12.11□□□□□ -0.47
Traf1P39428 Mir326-201ENSMUST00000083637 95 ntBASIC12.11□□□□□ -0.47
Traf1P39428 Rcbtb2-219ENSMUST00000169513 3622 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Traf1P39428 Gmip-202ENSMUST00000123453 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Traf1P39428 Gpsm1-201ENSMUST00000066889 3432 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Traf1P39428 Scn5a-203ENSMUST00000120420 7536 ntAPPRIS ALT1 TSL 5 BASIC12.11□□□□□ -0.47
Traf1P39428 Srrm4-201ENSMUST00000076124 7472 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Traf1P39428 Prnd-201ENSMUST00000110169 1918 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Traf1P39428 Morf4l2-212ENSMUST00000164609 1811 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
Traf1P39428 A830018L16Rik-209ENSMUST00000179089 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Traf1P39428 Dedd-202ENSMUST00000097467 1606 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Traf1P39428 Edil3-202ENSMUST00000081769 5317 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Traf1P39428 Col19a1-202ENSMUST00000115244 4266 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Traf1P39428 4632415L05Rik-202ENSMUST00000198527 4087 ntBASIC12.11□□□□□ -0.47
Traf1P39428 Prox1-203ENSMUST00000177288 3144 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Traf1P39428 Avil-201ENSMUST00000026500 3033 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Traf1P39428 Rtn4ip1-202ENSMUST00000105492 2059 ntTSL 3 BASIC12.1□□□□□ -0.47
Traf1P39428 Gtf2ird1-204ENSMUST00000100652 3693 ntAPPRIS P4 TSL 1 (best) BASIC12.1□□□□□ -0.47
Traf1P39428 Zfp54-202ENSMUST00000165230 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Traf1P39428 Psd2-203ENSMUST00000175734 4300 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Traf1P39428 Tacc2-205ENSMUST00000207282 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Traf1P39428 Kyat1-201ENSMUST00000044038 1876 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Traf1P39428 Zfp872-202ENSMUST00000178901 2958 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Traf1P39428 Zdbf2-202ENSMUST00000114132 12629 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Traf1P39428 1700017B05Rik-201ENSMUST00000034846 4152 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Traf1P39428 Zfp606-202ENSMUST00000123589 3509 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Traf1P39428 Ttc7b-206ENSMUST00000223020 3307 ntTSL 5 BASIC12.1□□□□□ -0.47
Traf1P39428 D2hgdh-201ENSMUST00000097633 3232 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Traf1P39428 Kcns2-202ENSMUST00000228725 4906 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
Traf1P39428 Gm15707-201ENSMUST00000118804 996 ntBASIC12.1□□□□□ -0.47
Traf1P39428 Olfr1372-ps1-201ENSMUST00000121007 934 ntBASIC12.1□□□□□ -0.47
Traf1P39428 Gm12916-201ENSMUST00000139012 948 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Traf1P39428 Tnni1-204ENSMUST00000139986 651 ntTSL 5 BASIC12.1□□□□□ -0.47
Traf1P39428 Atp5e-201ENSMUST00000016396 421 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Traf1P39428 Rhoc-205ENSMUST00000196817 877 ntAPPRIS P1 TSL 3 BASIC12.1□□□□□ -0.47
Traf1P39428 Gm18123-201ENSMUST00000210874 822 ntBASIC12.1□□□□□ -0.47
Traf1P39428 Gm32786-201ENSMUST00000211351 628 ntTSL 3 BASIC12.1□□□□□ -0.47
Traf1P39428 Gm18122-201ENSMUST00000211390 904 ntBASIC12.1□□□□□ -0.47
Traf1P39428 Gm2716-201ENSMUST00000212350 643 ntBASIC12.1□□□□□ -0.47
Traf1P39428 Gm8615-201ENSMUST00000025307 771 ntBASIC12.1□□□□□ -0.47
Traf1P39428 Klk1b22-201ENSMUST00000077528 855 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Traf1P39428 Krtap3-3-201ENSMUST00000092700 736 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
Traf1P39428 Gm9507-201ENSMUST00000095491 877 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
Traf1P39428 Psat1-205ENSMUST00000162053 2291 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Traf1P39428 AC154220.1-201ENSMUST00000225033 1705 ntBASIC12.1□□□□□ -0.47
Traf1P39428 Spaar-201ENSMUST00000131248 4086 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Traf1P39428 Rin1-208ENSMUST00000225427 4503 ntAPPRIS P2 BASIC12.1□□□□□ -0.47
Traf1P39428 Tmem184b-202ENSMUST00000178522 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Traf1P39428 Gm10463-202ENSMUST00000195772 2889 ntBASIC12.1□□□□□ -0.47
Traf1P39428 Pcdhb10-201ENSMUST00000051126 2851 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
Traf1P39428 Grem1-201ENSMUST00000099575 4148 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Traf1P39428 Bcl2l1-206ENSMUST00000140436 1865 ntTSL 2 BASIC12.1□□□□□ -0.47
Traf1P39428 Lrrc23-202ENSMUST00000112475 1444 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Traf1P39428 Oprm1-204ENSMUST00000063036 1427 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Traf1P39428 Chic1-201ENSMUST00000116547 7375 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Traf1P39428 G630064G18Rik-201ENSMUST00000209814 1795 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Traf1P39428 Ccar2-201ENSMUST00000035612 3725 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Traf1P39428 Spty2d1-201ENSMUST00000061639 5223 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Traf1P39428 Gm26865-201ENSMUST00000180970 3284 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Traf1P39428 Cdh15-201ENSMUST00000034443 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Traf1P39428 Cln3-204ENSMUST00000116269 2487 ntAPPRIS P2 TSL 5 BASIC12.1□□□□□ -0.47
Traf1P39428 Zdhhc3-208ENSMUST00000147563 6987 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Traf1P39428 Arpp21-217ENSMUST00000161412 1687 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Traf1P39428 Csrnp3-208ENSMUST00000176109 2958 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Traf1P39428 Gm21142-201ENSMUST00000179999 2604 ntBASIC12.09□□□□□ -0.47
Traf1P39428 Grk3-204ENSMUST00000197888 1938 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Traf1P39428 Arhgap24-203ENSMUST00000094559 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 54.8 ms