Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Pcdhgb8-201ENSMUST00000195764 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC8.55□□□□□ -1.04
Hoxd3P09027 Akap10-203ENSMUST00000108710 3394 ntTSL 2 BASIC8.55□□□□□ -1.04
Hoxd3P09027 Sel1l-201ENSMUST00000021347 6300 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
Hoxd3P09027 Gtf3c2-201ENSMUST00000088010 4552 ntAPPRIS P2 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Manea-201ENSMUST00000041374 4867 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Igtp-203ENSMUST00000168280 1832 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Eif3d-201ENSMUST00000100484 1910 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Frg2f1-201ENSMUST00000079611 1909 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Larp7-201ENSMUST00000029588 2121 ntAPPRIS P1 TSL 5 BASIC8.54□□□□□ -1.04
Hoxd3P09027 Vill-202ENSMUST00000074734 2440 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Kifc5b-201ENSMUST00000078961 2627 ntAPPRIS P1 TSL 5 BASIC8.54□□□□□ -1.04
Hoxd3P09027 Timm22-201ENSMUST00000021203 2817 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Rnf220-201ENSMUST00000030439 3029 ntAPPRIS P3 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Gstcd-201ENSMUST00000029651 3503 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Rnf144b-201ENSMUST00000068891 4640 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Slc9a3-203ENSMUST00000221703 5118 ntAPPRIS ALT2 TSL 5 BASIC8.54□□□□□ -1.04
Hoxd3P09027 Glyctk-202ENSMUST00000112543 4081 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Ppp4r1-201ENSMUST00000073104 3850 ntAPPRIS P3 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Wdr43-201ENSMUST00000047086 3450 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Nnt-203ENSMUST00000109204 3198 ntTSL 5 BASIC8.54□□□□□ -1.04
Hoxd3P09027 Gm38140-201ENSMUST00000193617 2755 ntBASIC8.54□□□□□ -1.04
Hoxd3P09027 Dusp10-201ENSMUST00000048655 2792 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Mest-210ENSMUST00000157040 2383 ntAPPRIS ALT1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Trak1-201ENSMUST00000045903 4827 ntAPPRIS P2 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Zfp869-201ENSMUST00000080987 1590 ntAPPRIS P1 TSL 5 BASIC8.54□□□□□ -1.04
Hoxd3P09027 Platr19-201ENSMUST00000171380 1466 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Gm43972-201ENSMUST00000181398 1467 ntBASIC8.54□□□□□ -1.04
Hoxd3P09027 Plscr1-202ENSMUST00000186364 1471 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Eno3-201ENSMUST00000072841 1454 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Cyb5b-201ENSMUST00000034400 4316 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Ikzf2-204ENSMUST00000188110 1365 ntTSL 5 BASIC8.54□□□□□ -1.04
Hoxd3P09027 Ikzf2-208ENSMUST00000190855 1359 ntTSL 5 BASIC8.54□□□□□ -1.04
Hoxd3P09027 Gm14356-201ENSMUST00000118322 869 ntBASIC8.54□□□□□ -1.04
Hoxd3P09027 Gm14497-201ENSMUST00000119537 580 ntBASIC8.54□□□□□ -1.04
Hoxd3P09027 Gm12634-201ENSMUST00000122157 992 ntBASIC8.54□□□□□ -1.04
Hoxd3P09027 Hyal1-203ENSMUST00000123005 843 ntTSL 3 BASIC8.54□□□□□ -1.04
Hoxd3P09027 4930506C21Rik-203ENSMUST00000130639 909 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Gm13267-201ENSMUST00000142787 698 ntTSL 3 BASIC8.54□□□□□ -1.04
Hoxd3P09027 9130204K15Rik-202ENSMUST00000150312 696 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Gm15866-202ENSMUST00000152116 914 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Gm17115-201ENSMUST00000164075 885 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Nup37-202ENSMUST00000169309 1277 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 2610020F03Rik-201ENSMUST00000180401 588 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 1600010M07Rik-201ENSMUST00000185931 1204 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Gm28356-202ENSMUST00000187566 858 ntBASIC8.54□□□□□ -1.04
Hoxd3P09027 Gm38324-201ENSMUST00000194390 411 ntTSL 3 BASIC8.54□□□□□ -1.04
Hoxd3P09027 Gm44395-201ENSMUST00000197056 153 ntBASIC8.54□□□□□ -1.04
Hoxd3P09027 Gm42509-201ENSMUST00000197390 781 ntBASIC8.54□□□□□ -1.04
Hoxd3P09027 Gm43732-201ENSMUST00000200260 511 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Gm44216-201ENSMUST00000203942 157 ntBASIC8.54□□□□□ -1.04
Hoxd3P09027 Gm34312-201ENSMUST00000204650 1092 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Rnf212-206ENSMUST00000212212 924 ntAPPRIS P1 TSL 5 BASIC8.54□□□□□ -1.04
Hoxd3P09027 Olfr931-ps1-201ENSMUST00000214941 549 ntBASIC8.54□□□□□ -1.04
Hoxd3P09027 Gm7588-201ENSMUST00000216866 571 ntBASIC8.54□□□□□ -1.04
Hoxd3P09027 Stt3a-209ENSMUST00000217599 285 ntTSL 5 BASIC8.54□□□□□ -1.04
Hoxd3P09027 Gm7525-201ENSMUST00000219425 454 ntBASIC8.54□□□□□ -1.04
Hoxd3P09027 AC116465.1-201ENSMUST00000220324 235 ntBASIC8.54□□□□□ -1.04
Hoxd3P09027 AC148334.1-201ENSMUST00000220853 370 ntTSL 5 BASIC8.54□□□□□ -1.04
Hoxd3P09027 AC154419.1-201ENSMUST00000227627 272 ntBASIC8.54□□□□□ -1.04
Hoxd3P09027 Gm4604-201ENSMUST00000025040 390 ntBASIC8.54□□□□□ -1.04
Hoxd3P09027 1700012P22Rik-201ENSMUST00000030323 974 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Olfr1178-201ENSMUST00000075640 972 ntAPPRIS P1 BASIC8.54□□□□□ -1.04
Hoxd3P09027 Gm25517-201ENSMUST00000083865 134 ntBASIC8.54□□□□□ -1.04
Hoxd3P09027 Iqcf1-201ENSMUST00000085114 613 ntAPPRIS P4 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Myl9-201ENSMUST00000088552 1128 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Nnt-201ENSMUST00000069902 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Ccdc97-201ENSMUST00000002683 3032 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Capn5-201ENSMUST00000040971 4498 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Zfp957-201ENSMUST00000040802 2613 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Amigo3-201ENSMUST00000085060 2543 ntAPPRIS P1 BASIC8.54□□□□□ -1.04
Hoxd3P09027 Gm5475-202ENSMUST00000148928 2320 ntAPPRIS ALT2 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Armc1-201ENSMUST00000029125 3673 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Fbln2-202ENSMUST00000113498 4644 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Fggy-201ENSMUST00000043335 1910 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Ptpn21-202ENSMUST00000170188 5562 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Gm14005-209ENSMUST00000224993 1832 ntBASIC8.54□□□□□ -1.04
Hoxd3P09027 4931406P16Rik-202ENSMUST00000108074 6224 ntAPPRIS P1 TSL 5 BASIC8.54□□□□□ -1.04
Hoxd3P09027 Sdk1-201ENSMUST00000074546 7063 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Tbc1d14-204ENSMUST00000130417 2665 ntTSL 5 BASIC8.54□□□□□ -1.04
Hoxd3P09027 Ighg2b-202ENSMUST00000192188 2566 ntAPPRIS P5 BASIC8.54□□□□□ -1.04
Hoxd3P09027 Slitrk4-202ENSMUST00000114679 3513 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Trmt2a-207ENSMUST00000140206 3520 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Lrrc3b-203ENSMUST00000223700 1426 ntAPPRIS P1 BASIC8.54□□□□□ -1.04
Hoxd3P09027 Vamp1-202ENSMUST00000063588 1400 ntTSL 2 BASIC8.54□□□□□ -1.04
Hoxd3P09027 Mllt3-201ENSMUST00000078090 6069 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Usp5-201ENSMUST00000047510 3213 ntAPPRIS P3 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Gm45793-201ENSMUST00000207900 1342 ntBASIC8.54□□□□□ -1.04
Hoxd3P09027 Wif1-203ENSMUST00000175867 2183 ntTSL 5 BASIC8.54□□□□□ -1.04
Hoxd3P09027 Cpa5-201ENSMUST00000062758 2187 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
Hoxd3P09027 Usp44-201ENSMUST00000095333 2946 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
Hoxd3P09027 Tex13c1-201ENSMUST00000105113 2074 ntAPPRIS P1 TSL 3 BASIC8.53□□□□□ -1.04
Hoxd3P09027 Ttll1-201ENSMUST00000016897 2057 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hoxd3P09027 Gm20089-201ENSMUST00000192391 2084 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
Hoxd3P09027 Gm37580-201ENSMUST00000192408 2800 ntBASIC8.53□□□□□ -1.04
Hoxd3P09027 Kdm3a-202ENSMUST00000167220 4853 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hoxd3P09027 Gm10614-201ENSMUST00000181414 2538 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
Hoxd3P09027 Txlna-201ENSMUST00000046425 4569 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hoxd3P09027 Dcun1d3-202ENSMUST00000098080 3072 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hoxd3P09027 Elavl2-201ENSMUST00000008633 3730 ntAPPRIS P4 TSL 1 (best) BASIC8.53□□□□□ -1.04
Hoxd3P09027 Ptpro-201ENSMUST00000077115 5049 ntAPPRIS P3 TSL 1 (best) BASIC8.53□□□□□ -1.04
Retrieved 100 of 76,532 protein–RNA pairs in 64.8 ms