Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC8.52□□□□□ -1.05
Hmgb3O54879 Gm11956-201ENSMUST00000119525 512 ntBASIC8.52□□□□□ -1.05
Hmgb3O54879 Spx-202ENSMUST00000126521 357 ntAPPRIS P2 TSL 5 BASIC8.52□□□□□ -1.05
Hmgb3O54879 2210406O10Rik-203ENSMUST00000149687 1198 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
Hmgb3O54879 Gm25668-201ENSMUST00000157700 129 ntBASIC8.52□□□□□ -1.05
Hmgb3O54879 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC8.52□□□□□ -1.05
Hmgb3O54879 Gm4753-201ENSMUST00000188327 1255 ntBASIC8.52□□□□□ -1.05
Hmgb3O54879 Gm29261-201ENSMUST00000188535 678 ntTSL 5 BASIC8.52□□□□□ -1.05
Hmgb3O54879 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC8.52□□□□□ -1.05
Hmgb3O54879 Gm40414-201ENSMUST00000197608 481 ntBASIC8.52□□□□□ -1.05
Hmgb3O54879 Gm17590-202ENSMUST00000197881 1232 ntTSL 2 BASIC8.52□□□□□ -1.05
Hmgb3O54879 Gm3961-201ENSMUST00000204425 994 ntBASIC8.52□□□□□ -1.05
Hmgb3O54879 Gm45717-201ENSMUST00000211129 495 ntAPPRIS P1 TSL 3 BASIC8.52□□□□□ -1.05
Hmgb3O54879 Mt1-202ENSMUST00000211807 1085 ntBASIC8.52□□□□□ -1.05
Hmgb3O54879 Apoa5-205ENSMUST00000215187 495 ntTSL 5 BASIC8.52□□□□□ -1.05
Hmgb3O54879 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC8.52□□□□□ -1.05
Hmgb3O54879 Gm36176-201ENSMUST00000218749 501 ntAPPRIS P1 BASIC8.52□□□□□ -1.05
Hmgb3O54879 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC8.52□□□□□ -1.05
Hmgb3O54879 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hmgb3O54879 Adig-201ENSMUST00000059889 632 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hmgb3O54879 Gm6994-201ENSMUST00000088880 1163 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
Hmgb3O54879 Gm21874-202ENSMUST00000190315 1538 ntAPPRIS P1 TSL 5 BASIC8.52□□□□□ -1.05
Hmgb3O54879 Gm26637-201ENSMUST00000180880 2289 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
Hmgb3O54879 Slc6a12-209ENSMUST00000171008 1674 ntAPPRIS ALT2 TSL 5 BASIC8.52□□□□□ -1.05
Hmgb3O54879 Gm37057-201ENSMUST00000192624 1916 ntBASIC8.52□□□□□ -1.05
Hmgb3O54879 Ces1f-201ENSMUST00000034178 1926 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hmgb3O54879 Gm42549-201ENSMUST00000202392 7004 ntBASIC8.52□□□□□ -1.05
Hmgb3O54879 Sema5a-201ENSMUST00000067458 10809 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hmgb3O54879 Slc7a14-202ENSMUST00000108245 3080 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
Hmgb3O54879 Lrrc57-201ENSMUST00000102496 1848 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hmgb3O54879 Cenpo-202ENSMUST00000111169 1550 ntAPPRIS ALT2 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hmgb3O54879 Gm18198-201ENSMUST00000204986 1551 ntBASIC8.52□□□□□ -1.05
Hmgb3O54879 Myt1-203ENSMUST00000108757 5115 ntAPPRIS ALT2 TSL 1 (best) BASIC8.52□□□□□ -1.05
Hmgb3O54879 Gm12592-201ENSMUST00000155332 2954 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
Hmgb3O54879 AC124426.1-201ENSMUST00000220871 2707 ntTSL 2 BASIC8.52□□□□□ -1.05
Hmgb3O54879 A630052C17Rik-201ENSMUST00000129876 2203 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
Hmgb3O54879 Olfr45-202ENSMUST00000214637 6157 ntAPPRIS P1 TSL 3 BASIC8.52□□□□□ -1.05
Hmgb3O54879 Zcchc8-201ENSMUST00000031376 4286 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
Hmgb3O54879 Gm30373-201ENSMUST00000215774 3500 ntTSL 5 BASIC8.51□□□□□ -1.05
Hmgb3O54879 Zscan21-202ENSMUST00000080732 2134 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
Hmgb3O54879 Plekhh1-204ENSMUST00000219956 5229 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
Hmgb3O54879 AC131029.1-201ENSMUST00000226391 2929 ntBASIC8.51□□□□□ -1.05
Hmgb3O54879 Zfp536-206ENSMUST00000176205 4372 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
Hmgb3O54879 Gm21039-201ENSMUST00000223359 2012 ntBASIC8.51□□□□□ -1.05
Hmgb3O54879 Mbd1-201ENSMUST00000097530 2833 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
Hmgb3O54879 Sf3b2-201ENSMUST00000025774 3231 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
Hmgb3O54879 Mpdz-216ENSMUST00000220807 6295 ntAPPRIS ALT2 TSL 5 BASIC8.51□□□□□ -1.05
Hmgb3O54879 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC8.51□□□□□ -1.05
Hmgb3O54879 Gpn1-201ENSMUST00000076949 3144 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
Hmgb3O54879 Ighv8-11-201ENSMUST00000103536 358 ntAPPRIS P1 BASIC8.51□□□□□ -1.05
Hmgb3O54879 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
Hmgb3O54879 Gm14058-201ENSMUST00000116082 735 ntBASIC8.51□□□□□ -1.05
Hmgb3O54879 Timm22-202ENSMUST00000120699 746 ntTSL 3 BASIC8.51□□□□□ -1.05
Hmgb3O54879 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC8.51□□□□□ -1.05
Hmgb3O54879 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC8.51□□□□□ -1.05
Hmgb3O54879 C230038L03Rik-202ENSMUST00000136294 1197 ntTSL 2 BASIC8.51□□□□□ -1.05
Hmgb3O54879 Gm15985-201ENSMUST00000137731 343 ntTSL 3 BASIC8.51□□□□□ -1.05
Hmgb3O54879 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
Hmgb3O54879 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC8.51□□□□□ -1.05
Hmgb3O54879 Gm16312-201ENSMUST00000156285 362 ntTSL 3 BASIC8.51□□□□□ -1.05
Hmgb3O54879 Gm3233-201ENSMUST00000168997 693 ntAPPRIS P1 BASIC8.51□□□□□ -1.05
Hmgb3O54879 Dusp3-207ENSMUST00000176261 496 ntTSL 3 BASIC8.51□□□□□ -1.05
Hmgb3O54879 Scgb2b27-203ENSMUST00000185399 702 ntAPPRIS ALT2 TSL 2 BASIC8.51□□□□□ -1.05
Hmgb3O54879 1600010M07Rik-202ENSMUST00000188662 654 ntTSL 2 BASIC8.51□□□□□ -1.05
Hmgb3O54879 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC8.51□□□□□ -1.05
Hmgb3O54879 Gm7783-201ENSMUST00000204795 781 ntBASIC8.51□□□□□ -1.05
Hmgb3O54879 Gm10318-202ENSMUST00000217996 639 ntTSL 5 BASIC8.51□□□□□ -1.05
Hmgb3O54879 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC8.51□□□□□ -1.05
Hmgb3O54879 AC124581.2-201ENSMUST00000225459 282 ntBASIC8.51□□□□□ -1.05
Hmgb3O54879 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
Hmgb3O54879 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC8.51□□□□□ -1.05
Hmgb3O54879 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC8.51□□□□□ -1.05
Hmgb3O54879 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC8.51□□□□□ -1.05
Hmgb3O54879 Ddo-201ENSMUST00000019977 3000 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
Hmgb3O54879 Mthfd1-206ENSMUST00000220046 3040 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
Hmgb3O54879 Smim1-202ENSMUST00000126119 3996 ntAPPRIS P1 TSL 2 BASIC8.51□□□□□ -1.05
Hmgb3O54879 5730460C07Rik-201ENSMUST00000081193 1834 ntTSL 2 BASIC8.51□□□□□ -1.05
Hmgb3O54879 Dnm2-203ENSMUST00000115404 3455 ntAPPRIS ALT1 TSL 5 BASIC8.51□□□□□ -1.05
Hmgb3O54879 Cald1-203ENSMUST00000115021 4041 ntAPPRIS P2 TSL 1 (best) BASIC8.51□□□□□ -1.05
Hmgb3O54879 Supt20-ps-201ENSMUST00000117999 1560 ntBASIC8.51□□□□□ -1.05
Hmgb3O54879 Rnf111-207ENSMUST00000215848 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC8.51□□□□□ -1.05
Hmgb3O54879 Zfp869-201ENSMUST00000080987 1590 ntAPPRIS P1 TSL 5 BASIC8.51□□□□□ -1.05
Hmgb3O54879 Mcm5-201ENSMUST00000164309 3381 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
Hmgb3O54879 Gulo-201ENSMUST00000059970 2263 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
Hmgb3O54879 Mpp2-201ENSMUST00000017458 4089 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
Hmgb3O54879 Mark1-201ENSMUST00000027929 4221 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
Hmgb3O54879 Jam2-202ENSMUST00000114195 4370 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
Hmgb3O54879 Aplf-202ENSMUST00000065997 3132 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
Hmgb3O54879 Galns-201ENSMUST00000015171 2557 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
Hmgb3O54879 Slc2a1-201ENSMUST00000030398 3260 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
Hmgb3O54879 Cage1-203ENSMUST00000110233 2875 ntAPPRIS P1 TSL 5 BASIC8.51□□□□□ -1.05
Hmgb3O54879 Fbp1-201ENSMUST00000092888 1479 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
Hmgb3O54879 Ackr2-202ENSMUST00000214340 3015 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
Hmgb3O54879 Tmem245-201ENSMUST00000068792 15981 ntAPPRIS ALT2 TSL 5 BASIC8.51□□□□□ -1.05
Hmgb3O54879 Xdh-201ENSMUST00000024866 4587 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
Hmgb3O54879 Pde2a-212ENSMUST00000211368 3885 ntAPPRIS P3 TSL 5 BASIC8.51□□□□□ -1.05
Hmgb3O54879 Ilf3-208ENSMUST00000214758 3177 ntAPPRIS ALT2 TSL 5 BASIC8.51□□□□□ -1.05
Hmgb3O54879 Six6-201ENSMUST00000021519 4009 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
Hmgb3O54879 Slc22a21-201ENSMUST00000076493 3461 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
Hmgb3O54879 Acad10-202ENSMUST00000111770 3626 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
Retrieved 100 of 76,532 protein–RNA pairs in 51.5 ms