Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Dhdds-201ENSMUST00000012262 3133 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp40Q8BWR4 Lin54-209ENSMUST00000152387 2760 ntTSL 5 BASIC14.28□□□□□ -0.12
Usp40Q8BWR4 Aoc2-201ENSMUST00000041095 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp40Q8BWR4 Gm45234-201ENSMUST00000129411 4359 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
Usp40Q8BWR4 Sema5b-201ENSMUST00000050625 4350 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usp40Q8BWR4 Msln-201ENSMUST00000075884 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usp40Q8BWR4 Cnppd1-202ENSMUST00000168720 3669 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usp40Q8BWR4 Ikbkb-201ENSMUST00000033939 3580 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usp40Q8BWR4 Gm44907-201ENSMUST00000207423 1633 ntBASIC14.27□□□□□ -0.12
Usp40Q8BWR4 BC003331-203ENSMUST00000097546 3174 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Usp40Q8BWR4 Colq-201ENSMUST00000112027 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usp40Q8BWR4 Mybpc3-203ENSMUST00000169776 4163 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.12
Usp40Q8BWR4 Dna2-203ENSMUST00000131422 4122 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usp40Q8BWR4 Gm43860-201ENSMUST00000201742 2705 ntBASIC14.27□□□□□ -0.12
Usp40Q8BWR4 Zscan10-201ENSMUST00000095595 2698 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usp40Q8BWR4 Sh3glb1-204ENSMUST00000199531 2584 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Usp40Q8BWR4 Gm13192-201ENSMUST00000101199 208 ntBASIC14.27□□□□□ -0.13
Usp40Q8BWR4 Gm13547-202ENSMUST00000113810 629 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usp40Q8BWR4 Gm10443-201ENSMUST00000119024 210 ntBASIC14.27□□□□□ -0.13
Usp40Q8BWR4 4921508D12Rik-201ENSMUST00000124095 1075 ntTSL 2 BASIC14.27□□□□□ -0.13
Usp40Q8BWR4 Zfp738-202ENSMUST00000125495 712 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Usp40Q8BWR4 Gm13191-201ENSMUST00000136489 416 ntTSL 3 BASIC14.27□□□□□ -0.13
Usp40Q8BWR4 Pla2g1b-204ENSMUST00000145785 419 ntTSL 5 BASIC14.27□□□□□ -0.13
Usp40Q8BWR4 Gm15419-201ENSMUST00000148654 743 ntTSL 3 BASIC14.27□□□□□ -0.13
Usp40Q8BWR4 Gm11655-201ENSMUST00000153899 765 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Usp40Q8BWR4 Gm26626-201ENSMUST00000180989 713 ntTSL 2 BASIC14.27□□□□□ -0.13
Usp40Q8BWR4 Gm26875-201ENSMUST00000181006 950 ntBASIC14.27□□□□□ -0.13
Usp40Q8BWR4 1110020A21Rik-201ENSMUST00000181147 853 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Usp40Q8BWR4 Gm3052-201ENSMUST00000186409 829 ntBASIC14.27□□□□□ -0.13
Usp40Q8BWR4 Gm29304-201ENSMUST00000186555 695 ntBASIC14.27□□□□□ -0.13
Usp40Q8BWR4 Gm29223-201ENSMUST00000188867 695 ntBASIC14.27□□□□□ -0.13
Usp40Q8BWR4 Gm28342-201ENSMUST00000190308 589 ntTSL 3 BASIC14.27□□□□□ -0.13
Usp40Q8BWR4 Gm20568-201ENSMUST00000197129 208 ntBASIC14.27□□□□□ -0.13
Usp40Q8BWR4 Gm5905-201ENSMUST00000211731 580 ntBASIC14.27□□□□□ -0.13
Usp40Q8BWR4 Gm18646-201ENSMUST00000212240 1063 ntBASIC14.27□□□□□ -0.13
Usp40Q8BWR4 CT025547.1-201ENSMUST00000225127 578 ntBASIC14.27□□□□□ -0.13
Usp40Q8BWR4 Scgb3a1-201ENSMUST00000043873 493 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usp40Q8BWR4 Scgb3a1-202ENSMUST00000076006 598 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usp40Q8BWR4 n-R5s25-201ENSMUST00000082923 119 ntBASIC14.27□□□□□ -0.13
Usp40Q8BWR4 Ephb4-202ENSMUST00000111054 3784 ntTSL 5 BASIC14.27□□□□□ -0.13
Usp40Q8BWR4 Sema3b-203ENSMUST00000102530 3410 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Usp40Q8BWR4 Sell-201ENSMUST00000027871 2199 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usp40Q8BWR4 L1cam-202ENSMUST00000102871 5113 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usp40Q8BWR4 Ndst1-201ENSMUST00000169273 6070 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usp40Q8BWR4 Cage1-203ENSMUST00000110233 2875 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Usp40Q8BWR4 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usp40Q8BWR4 Ttll7-203ENSMUST00000106134 2664 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Usp40Q8BWR4 Il7-204ENSMUST00000194184 1785 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Usp40Q8BWR4 AC116596.1-201ENSMUST00000228112 1762 ntBASIC14.27□□□□□ -0.13
Usp40Q8BWR4 C2cd5-203ENSMUST00000171349 4292 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Usp40Q8BWR4 Fbxl5-202ENSMUST00000087465 4237 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Usp40Q8BWR4 Capza1-201ENSMUST00000094028 3193 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp40Q8BWR4 Gm7742-201ENSMUST00000167648 1527 ntBASIC14.26□□□□□ -0.13
Usp40Q8BWR4 Gm7732-201ENSMUST00000170486 1527 ntBASIC14.26□□□□□ -0.13
Usp40Q8BWR4 Gm7740-201ENSMUST00000186171 1527 ntBASIC14.26□□□□□ -0.13
Usp40Q8BWR4 Gm7736-201ENSMUST00000096981 1527 ntBASIC14.26□□□□□ -0.13
Usp40Q8BWR4 Gm14538-201ENSMUST00000122019 1327 ntBASIC14.26□□□□□ -0.13
Usp40Q8BWR4 Fcgr3-204ENSMUST00000169017 1324 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp40Q8BWR4 Arpc3-202ENSMUST00000102525 899 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp40Q8BWR4 Gm24161-201ENSMUST00000104592 130 ntBASIC14.26□□□□□ -0.13
Usp40Q8BWR4 Gm15285-201ENSMUST00000119271 473 ntBASIC14.26□□□□□ -0.13
Usp40Q8BWR4 Gm13624-201ENSMUST00000120263 462 ntBASIC14.26□□□□□ -0.13
Usp40Q8BWR4 Gm16193-201ENSMUST00000125903 778 ntTSL 3 BASIC14.26□□□□□ -0.13
Usp40Q8BWR4 Speer4f2-201ENSMUST00000166086 1278 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Usp40Q8BWR4 Gm5259-201ENSMUST00000191231 800 ntBASIC14.26□□□□□ -0.13
Usp40Q8BWR4 1700030N03Rik-206ENSMUST00000191405 651 ntTSL 3 BASIC14.26□□□□□ -0.13
Usp40Q8BWR4 Gm38004-201ENSMUST00000192972 357 ntBASIC14.26□□□□□ -0.13
Usp40Q8BWR4 5830487J09Rik-201ENSMUST00000198600 1256 ntTSL 5 BASIC14.26□□□□□ -0.13
Usp40Q8BWR4 Pf4-203ENSMUST00000202625 411 ntTSL 2 BASIC14.26□□□□□ -0.13
Usp40Q8BWR4 Gm32111-201ENSMUST00000207689 846 ntBASIC14.26□□□□□ -0.13
Usp40Q8BWR4 Crip1-201ENSMUST00000006523 445 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp40Q8BWR4 Fbxo40-202ENSMUST00000114806 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp40Q8BWR4 Metap1-203ENSMUST00000197531 3708 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Usp40Q8BWR4 Rnf216-209ENSMUST00000200607 3704 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp40Q8BWR4 Chmp1b-202ENSMUST00000210564 2490 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Usp40Q8BWR4 Cep112-213ENSMUST00000150863 3453 ntTSL 5 BASIC14.26□□□□□ -0.13
Usp40Q8BWR4 Fdft1-201ENSMUST00000054963 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp40Q8BWR4 Calr4-201ENSMUST00000030285 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp40Q8BWR4 Gm44415-201ENSMUST00000204151 2112 ntBASIC14.26□□□□□ -0.13
Usp40Q8BWR4 2210010C04Rik-201ENSMUST00000031931 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp40Q8BWR4 Iyd-201ENSMUST00000019896 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp40Q8BWR4 Hat1-201ENSMUST00000028408 1576 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp40Q8BWR4 Wdr95-207ENSMUST00000202902 2574 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Usp40Q8BWR4 4833420G17Rik-201ENSMUST00000026519 2565 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp40Q8BWR4 Kpna7-202ENSMUST00000110673 2453 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Usp40Q8BWR4 Ces1a-201ENSMUST00000095211 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp40Q8BWR4 Gpsm1-201ENSMUST00000066889 3432 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp40Q8BWR4 Cd6-202ENSMUST00000039043 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp40Q8BWR4 Gm42962-201ENSMUST00000201966 2325 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Usp40Q8BWR4 Cfap100-201ENSMUST00000062750 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp40Q8BWR4 Topbp1-201ENSMUST00000035164 5224 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp40Q8BWR4 Sh3bgrl3-202ENSMUST00000105879 518 ntTSL 3 BASIC14.25□□□□□ -0.13
Usp40Q8BWR4 Mrps33-202ENSMUST00000114797 500 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Usp40Q8BWR4 Itpa-ps1-201ENSMUST00000117207 597 ntBASIC14.25□□□□□ -0.13
Usp40Q8BWR4 Gm12736-201ENSMUST00000119330 236 ntBASIC14.25□□□□□ -0.13
Usp40Q8BWR4 Gm829-201ENSMUST00000123741 465 ntTSL 3 BASIC14.25□□□□□ -0.13
Usp40Q8BWR4 Gm23432-201ENSMUST00000157181 131 ntBASIC14.25□□□□□ -0.13
Usp40Q8BWR4 Rhox12-203ENSMUST00000183737 761 ntTSL 3 BASIC14.25□□□□□ -0.13
Usp40Q8BWR4 Gm43450-201ENSMUST00000202611 632 ntTSL 3 BASIC14.25□□□□□ -0.13
Usp40Q8BWR4 Gm19121-201ENSMUST00000215720 1022 ntBASIC14.25□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 77.2 ms