Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 AC133496.1-201ENSMUST00000223891 743 ntBASIC12.16□□□□□ -0.46
Traf1P39428 AC133517.1-201ENSMUST00000225825 594 ntBASIC12.16□□□□□ -0.46
Traf1P39428 Ssna1-201ENSMUST00000028342 862 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Traf1P39428 Gm5424-201ENSMUST00000053865 1240 ntBASIC12.16□□□□□ -0.46
Traf1P39428 Ifne-201ENSMUST00000056014 664 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Traf1P39428 Defb29-201ENSMUST00000060598 462 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Traf1P39428 Krtap2-4-201ENSMUST00000074926 828 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Traf1P39428 Adar-204ENSMUST00000118341 2399 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Traf1P39428 Sgca-205ENSMUST00000166320 1428 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Traf1P39428 C130060K24Rik-203ENSMUST00000170608 2953 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Traf1P39428 Ttc23-201ENSMUST00000032774 2492 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Traf1P39428 Nmt2-201ENSMUST00000081932 4461 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Traf1P39428 Gm45140-202ENSMUST00000204419 5061 ntAPPRIS P5 TSL 5 BASIC12.16□□□□□ -0.46
Traf1P39428 3425401B19Rik-201ENSMUST00000096038 5547 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Traf1P39428 Ipo4-201ENSMUST00000047131 3846 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Traf1P39428 Carns1-201ENSMUST00000167055 3968 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Traf1P39428 Ptprt-204ENSMUST00000109445 12082 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Traf1P39428 Mkrn1-ps1-201ENSMUST00000122035 1390 ntBASIC12.16□□□□□ -0.46
Traf1P39428 Zscan21-201ENSMUST00000062350 2252 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Traf1P39428 Ank2-214ENSMUST00000182547 2428 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Traf1P39428 Lig3-212ENSMUST00000173727 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Traf1P39428 Sel1l-204ENSMUST00000167466 5544 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Traf1P39428 Ptpn11-201ENSMUST00000054547 5535 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Traf1P39428 Gm15651-201ENSMUST00000159953 2507 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Traf1P39428 Gm11571-201ENSMUST00000136820 2396 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Traf1P39428 Sppl2c-201ENSMUST00000059448 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Traf1P39428 Gm10684-201ENSMUST00000098827 2203 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Traf1P39428 Tcp10a-203ENSMUST00000129709 1778 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Traf1P39428 Olfr1490-202ENSMUST00000213900 5165 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Traf1P39428 Tcl1b4-202ENSMUST00000222867 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Traf1P39428 Myh1-202ENSMUST00000075734 6012 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Traf1P39428 Stx1b-201ENSMUST00000106267 4536 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Traf1P39428 Kif19a-201ENSMUST00000084368 3433 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Traf1P39428 Gm12097-201ENSMUST00000121523 1414 ntBASIC12.15□□□□□ -0.46
Traf1P39428 Rps6-201ENSMUST00000102814 878 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Traf1P39428 Spaca9-201ENSMUST00000102877 671 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Traf1P39428 Trbv31-201ENSMUST00000103300 334 ntAPPRIS ALT2 BASIC12.15□□□□□ -0.46
Traf1P39428 Klra9-202ENSMUST00000112032 1279 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Traf1P39428 Gm6238-201ENSMUST00000120999 465 ntBASIC12.15□□□□□ -0.46
Traf1P39428 H2afb3-201ENSMUST00000122050 348 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Traf1P39428 Gm16069-201ENSMUST00000131146 545 ntTSL 3 BASIC12.15□□□□□ -0.46
Traf1P39428 AC034099.1-202ENSMUST00000133843 833 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Traf1P39428 Ly6i-202ENSMUST00000166694 620 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Traf1P39428 Gast-201ENSMUST00000017309 460 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Traf1P39428 Milr1-206ENSMUST00000182896 918 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Traf1P39428 Milr1-207ENSMUST00000182908 811 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Traf1P39428 Gm29669-201ENSMUST00000188605 881 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Traf1P39428 Gm5311-201ENSMUST00000203518 709 ntBASIC12.15□□□□□ -0.46
Traf1P39428 Gm44507-201ENSMUST00000206249 343 ntTSL 5 BASIC12.15□□□□□ -0.46
Traf1P39428 Fxyd1-214ENSMUST00000206328 545 ntAPPRIS P1 TSL 3 BASIC12.15□□□□□ -0.46
Traf1P39428 Gm34908-201ENSMUST00000207222 569 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Traf1P39428 Gm34868-201ENSMUST00000218341 530 ntTSL 3 BASIC12.15□□□□□ -0.46
Traf1P39428 Gm9736-201ENSMUST00000219969 834 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Traf1P39428 Gm8557-201ENSMUST00000220777 475 ntBASIC12.15□□□□□ -0.46
Traf1P39428 Gm7242-201ENSMUST00000221134 705 ntBASIC12.15□□□□□ -0.46
Traf1P39428 Gm26861-207ENSMUST00000223253 1095 ntTSL 5 BASIC12.15□□□□□ -0.46
Traf1P39428 AC134860.2-201ENSMUST00000225277 1036 ntBASIC12.15□□□□□ -0.46
Traf1P39428 4930546C10Rik-201ENSMUST00000025428 363 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Traf1P39428 Klra9-201ENSMUST00000071554 1123 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Traf1P39428 Mrgpra4-201ENSMUST00000087092 1259 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Traf1P39428 Pygl-201ENSMUST00000071250 2825 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Traf1P39428 Armcx3-203ENSMUST00000086884 3488 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Traf1P39428 Angptl2-201ENSMUST00000004208 3339 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Traf1P39428 Frmd4b-201ENSMUST00000032146 3159 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Traf1P39428 Nrf1-208ENSMUST00000115208 2492 ntTSL 5 BASIC12.15□□□□□ -0.46
Traf1P39428 Ddr1-202ENSMUST00000097333 3593 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Traf1P39428 Gm5703-201ENSMUST00000186658 3973 ntBASIC12.15□□□□□ -0.46
Traf1P39428 Ncor2-202ENSMUST00000086083 8575 ntAPPRIS P2 TSL 5 BASIC12.15□□□□□ -0.47
Traf1P39428 Pcdhb14-201ENSMUST00000052387 8695 ntAPPRIS P1 BASIC12.15□□□□□ -0.47
Traf1P39428 Gdf2-201ENSMUST00000100720 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Traf1P39428 AC140462.2-201ENSMUST00000225718 2433 ntBASIC12.15□□□□□ -0.47
Traf1P39428 Sirpa-201ENSMUST00000049262 3644 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.47
Traf1P39428 Gm29101-201ENSMUST00000188329 1471 ntBASIC12.14□□□□□ -0.47
Traf1P39428 Myo1c-203ENSMUST00000102505 4652 ntAPPRIS ALT1 TSL 5 BASIC12.14□□□□□ -0.47
Traf1P39428 Zfp617-201ENSMUST00000119003 2920 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Traf1P39428 Psmd12-202ENSMUST00000106750 1311 ntTSL 5 BASIC12.14□□□□□ -0.47
Traf1P39428 Gm42941-201ENSMUST00000200347 1321 ntBASIC12.14□□□□□ -0.47
Traf1P39428 Gm44617-202ENSMUST00000209122 2763 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Traf1P39428 Zmynd11-203ENSMUST00000110634 3824 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Traf1P39428 Myo18a-224ENSMUST00000172303 6339 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Traf1P39428 Acsbg1-201ENSMUST00000034822 2880 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Traf1P39428 Pcsk9-201ENSMUST00000049507 3521 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Traf1P39428 Gpr158-201ENSMUST00000055946 7171 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Traf1P39428 Zfp354b-201ENSMUST00000109124 2455 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Traf1P39428 Gm38357-201ENSMUST00000195382 2464 ntBASIC12.14□□□□□ -0.47
Traf1P39428 C030037D09Rik-203ENSMUST00000138007 3220 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Traf1P39428 Gm24470-201ENSMUST00000104486 132 ntBASIC12.14□□□□□ -0.47
Traf1P39428 Nifk-202ENSMUST00000112688 849 ntTSL 5 BASIC12.14□□□□□ -0.47
Traf1P39428 Tprkb-204ENSMUST00000113752 749 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Traf1P39428 Gm4943-201ENSMUST00000132879 424 ntBASIC12.14□□□□□ -0.47
Traf1P39428 Gm16538-201ENSMUST00000162407 442 ntTSL 2 BASIC12.14□□□□□ -0.47
Traf1P39428 Zfp637-210ENSMUST00000164472 1098 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Traf1P39428 Gm37885-202ENSMUST00000195868 685 ntTSL 3 BASIC12.14□□□□□ -0.47
Traf1P39428 Gm43811-201ENSMUST00000202862 695 ntBASIC12.14□□□□□ -0.47
Traf1P39428 Tmem238l-203ENSMUST00000211300 930 ntAPPRIS P1 TSL 3 BASIC12.14□□□□□ -0.47
Traf1P39428 Gm46328-201ENSMUST00000217924 976 ntTSL 5 BASIC12.14□□□□□ -0.47
Traf1P39428 AC140381.2-201ENSMUST00000217935 1260 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Traf1P39428 Gm40910-202ENSMUST00000223077 569 ntTSL 5 BASIC12.14□□□□□ -0.47
Traf1P39428 Gm36862-204ENSMUST00000223365 642 ntTSL 3 BASIC12.14□□□□□ -0.47
Traf1P39428 AC141884.2-201ENSMUST00000228811 775 ntBASIC12.14□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 54.6 ms