Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Acsm2-202ENSMUST00000098084 2099 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Smc1aQ9CU62 Slc35a4-206ENSMUST00000186538 2842 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Smc1aQ9CU62 Wdr31-202ENSMUST00000107452 1437 ntAPPRIS ALT1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Smc1aQ9CU62 Gm364-201ENSMUST00000114725 2156 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
Smc1aQ9CU62 Il12rb2-201ENSMUST00000018485 2998 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Smc1aQ9CU62 Rnf216-201ENSMUST00000053498 4474 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Smc1aQ9CU62 Trim6-206ENSMUST00000214578 1506 ntTSL 5 BASIC11.75□□□□□ -0.53
Smc1aQ9CU62 Gm43112-201ENSMUST00000196665 3122 ntBASIC11.75□□□□□ -0.53
Smc1aQ9CU62 Man2c1-201ENSMUST00000034836 3215 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Smc1aQ9CU62 Mgl2-205ENSMUST00000165951 1635 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Smc1aQ9CU62 Lhx9-201ENSMUST00000019374 4937 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Smc1aQ9CU62 Tti2-201ENSMUST00000098842 5039 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Smc1aQ9CU62 C2cd5-201ENSMUST00000087485 4265 ntTSL 5 BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Plxna3-201ENSMUST00000004326 6943 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Gcsam-202ENSMUST00000161347 1796 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Uqcrc2-201ENSMUST00000033176 1896 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Plekhg5-202ENSMUST00000105661 3842 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Stra6-201ENSMUST00000034880 2993 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Gm11426-201ENSMUST00000125600 2220 ntTSL 2 BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Nampt-201ENSMUST00000020886 4527 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Adgrl3-204ENSMUST00000117407 5705 ntTSL 5 BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Scnn1a-201ENSMUST00000081440 3499 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Hjurp-201ENSMUST00000054674 4878 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Duoxa1-203ENSMUST00000110538 2467 ntTSL 5 BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Gm10614-201ENSMUST00000181414 2538 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Als2-201ENSMUST00000027178 6342 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Trgv2-201ENSMUST00000103563 491 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Gm23745-201ENSMUST00000104230 125 ntBASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Tnfrsf9-203ENSMUST00000105671 1278 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Il1rn-202ENSMUST00000114485 728 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Gm11475-201ENSMUST00000118482 476 ntBASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Gm5555-201ENSMUST00000120352 1111 ntBASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Gm3828-201ENSMUST00000121817 257 ntBASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Gm14255-201ENSMUST00000128846 248 ntTSL 5 BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Gm11642-201ENSMUST00000150442 440 ntTSL 5 BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Gm16165-201ENSMUST00000160140 795 ntBASIC11.74□□□□□ -0.53
Smc1aQ9CU62 1700099I09Rik-201ENSMUST00000167834 769 ntTSL 2 BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Gm27003-201ENSMUST00000182590 497 ntTSL 5 BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Gm5267-201ENSMUST00000191574 1045 ntBASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Gm38324-201ENSMUST00000194390 411 ntTSL 3 BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Gm37301-201ENSMUST00000195412 568 ntBASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Gm43547-201ENSMUST00000197729 328 ntBASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Gm43752-201ENSMUST00000198475 697 ntBASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Cldnd2-202ENSMUST00000206839 583 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Gm44953-201ENSMUST00000208745 1286 ntBASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Olfr1227-ps1-201ENSMUST00000215627 928 ntBASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Akr1c18-201ENSMUST00000021635 1200 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Gm18165-201ENSMUST00000217426 928 ntBASIC11.74□□□□□ -0.53
Smc1aQ9CU62 AC122860.1-201ENSMUST00000217669 773 ntTSL 3 BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Gpr137b-ps-202ENSMUST00000220647 1159 ntBASIC11.74□□□□□ -0.53
Smc1aQ9CU62 CT025689.1-201ENSMUST00000225214 283 ntBASIC11.74□□□□□ -0.53
Smc1aQ9CU62 AC159002.1-201ENSMUST00000226714 924 ntBASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Tnfrsf9-202ENSMUST00000060901 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Gm37648-201ENSMUST00000192072 2563 ntBASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Ubr1-201ENSMUST00000028728 7768 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Hnrnpk-216ENSMUST00000177019 2626 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Gm13871-202ENSMUST00000107319 1324 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Gm11757-202ENSMUST00000107321 1324 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Atp6v1e1-201ENSMUST00000019354 1312 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Gm26826-201ENSMUST00000181317 1395 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Gm14005-210ENSMUST00000225087 1413 ntBASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Arhgap4-202ENSMUST00000114404 2895 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Gm20715-201ENSMUST00000054781 4460 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Xlr4c-201ENSMUST00000068551 1500 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Eef2-201ENSMUST00000047864 3089 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Map4-204ENSMUST00000164930 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Sall2-201ENSMUST00000058326 5147 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Olfr95-201ENSMUST00000060728 5129 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Gm8036-201ENSMUST00000118089 1718 ntBASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Sgk3-204ENSMUST00000171265 3680 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Arih2-201ENSMUST00000013338 3924 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Apobec1-201ENSMUST00000112585 2127 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Lrrc8a-201ENSMUST00000095078 4301 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Ly9-203ENSMUST00000111277 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Gm10748-202ENSMUST00000194396 2379 ntBASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Tesk2-202ENSMUST00000106456 2430 ntTSL 5 BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 9330175E14Rik-201ENSMUST00000180445 4852 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Acsm5-205ENSMUST00000207440 2494 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Klhl22-202ENSMUST00000120488 2596 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Smc1aQ9CU62 Klhl7-202ENSMUST00000163409 2857 ntTSL 2 BASIC11.73□□□□□ -0.53
Smc1aQ9CU62 Riok3-201ENSMUST00000025270 3661 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Smc1aQ9CU62 Tmem67-202ENSMUST00000108293 3945 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Smc1aQ9CU62 Atg4b-201ENSMUST00000027502 4173 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Smc1aQ9CU62 Acsl5-201ENSMUST00000043150 4243 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Smc1aQ9CU62 Olfr1349-206ENSMUST00000213656 4492 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Smc1aQ9CU62 Grb10-202ENSMUST00000109653 2048 ntTSL 5 BASIC11.73□□□□□ -0.53
Smc1aQ9CU62 Lrfn5-202ENSMUST00000119481 3615 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Smc1aQ9CU62 Gm11033-201ENSMUST00000127757 1445 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Smc1aQ9CU62 Zfp961-203ENSMUST00000132848 781 ntTSL 5 BASIC11.73□□□□□ -0.53
Smc1aQ9CU62 AC034099.1-202ENSMUST00000133843 833 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Smc1aQ9CU62 Il1f5-205ENSMUST00000147885 1392 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Smc1aQ9CU62 Ppp2r2cos-201ENSMUST00000152862 1491 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Smc1aQ9CU62 Phc1-204ENSMUST00000159252 3744 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Smc1aQ9CU62 Fam83a-202ENSMUST00000160942 2876 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Smc1aQ9CU62 Gm17115-201ENSMUST00000164075 885 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Smc1aQ9CU62 Pfdn5-203ENSMUST00000165671 830 ntTSL 2 BASIC11.73□□□□□ -0.53
Smc1aQ9CU62 Gm27956-201ENSMUST00000175604 260 ntBASIC11.73□□□□□ -0.53
Smc1aQ9CU62 Gm7929-201ENSMUST00000178711 624 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Smc1aQ9CU62 Gm3015-202ENSMUST00000179803 624 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Smc1aQ9CU62 Gm38344-201ENSMUST00000195306 1353 ntBASIC11.73□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 62 ms