Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Pm20d1-202ENSMUST00000112393 6900 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
Hmgb3O54879 A930003O13Rik-202ENSMUST00000197486 3098 ntBASIC8.57□□□□□ -1.04
Hmgb3O54879 Myrf-205ENSMUST00000189897 3339 ntAPPRIS P2 TSL 5 BASIC8.57□□□□□ -1.04
Hmgb3O54879 Ctrc-202ENSMUST00000105781 784 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
Hmgb3O54879 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
Hmgb3O54879 Gm14398-201ENSMUST00000117287 1073 ntBASIC8.57□□□□□ -1.04
Hmgb3O54879 Hint1-202ENSMUST00000117710 580 ntTSL 2 BASIC8.57□□□□□ -1.04
Hmgb3O54879 Gm15515-201ENSMUST00000117827 822 ntBASIC8.57□□□□□ -1.04
Hmgb3O54879 Gm9133-201ENSMUST00000118289 540 ntBASIC8.57□□□□□ -1.04
Hmgb3O54879 Gm8302-201ENSMUST00000119217 852 ntBASIC8.57□□□□□ -1.04
Hmgb3O54879 Gm4917-201ENSMUST00000121452 650 ntBASIC8.57□□□□□ -1.04
Hmgb3O54879 Gm12224-201ENSMUST00000124047 567 ntTSL 2 BASIC8.57□□□□□ -1.04
Hmgb3O54879 Gm16587-201ENSMUST00000161943 863 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
Hmgb3O54879 Gm17231-203ENSMUST00000170133 637 ntTSL 3 BASIC8.57□□□□□ -1.04
Hmgb3O54879 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC8.57□□□□□ -1.04
Hmgb3O54879 Rpl31-202ENSMUST00000178079 487 ntAPPRIS P1 TSL 2 BASIC8.57□□□□□ -1.04
Hmgb3O54879 Gm19705-203ENSMUST00000181491 678 ntTSL 5 BASIC8.57□□□□□ -1.04
Hmgb3O54879 Mir7085-201ENSMUST00000184353 66 ntBASIC8.57□□□□□ -1.04
Hmgb3O54879 AC107638.1-201ENSMUST00000213690 1061 ntBASIC8.57□□□□□ -1.04
Hmgb3O54879 CT009713.8-201ENSMUST00000225448 560 ntBASIC8.57□□□□□ -1.04
Hmgb3O54879 Gm5468-202ENSMUST00000227851 682 ntBASIC8.57□□□□□ -1.04
Hmgb3O54879 Ccdc87-201ENSMUST00000088653 3163 ntAPPRIS P1 BASIC8.57□□□□□ -1.04
Hmgb3O54879 Dclre1b-203ENSMUST00000106832 2299 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
Hmgb3O54879 Gm30074-201ENSMUST00000193192 2541 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
Hmgb3O54879 Gm10857-201ENSMUST00000195343 2794 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
Hmgb3O54879 Mbnl3-202ENSMUST00000114875 4649 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
Hmgb3O54879 Gm42853-201ENSMUST00000201273 1387 ntBASIC8.57□□□□□ -1.04
Hmgb3O54879 4933422A05Rik-201ENSMUST00000213706 1356 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
Hmgb3O54879 Olfr161-202ENSMUST00000216259 7133 ntAPPRIS P1 TSL 5 BASIC8.57□□□□□ -1.04
Hmgb3O54879 CT033774.1-201ENSMUST00000223084 2394 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
Hmgb3O54879 Cfap65-201ENSMUST00000094844 5727 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
Hmgb3O54879 Fignl1-207ENSMUST00000171938 2974 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
Hmgb3O54879 Arhgap36-201ENSMUST00000042444 2733 ntAPPRIS ALT2 TSL 5 BASIC8.57□□□□□ -1.04
Hmgb3O54879 BC017643-202ENSMUST00000106115 2239 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
Hmgb3O54879 Gm10804-201ENSMUST00000099693 2244 ntTSL 2 BASIC8.57□□□□□ -1.04
Hmgb3O54879 Tex21-202ENSMUST00000218426 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC8.57□□□□□ -1.04
Hmgb3O54879 D3Ertd751e-201ENSMUST00000026867 1989 ntAPPRIS ALT2 TSL 5 BASIC8.57□□□□□ -1.04
Hmgb3O54879 Ankrd53-201ENSMUST00000014891 1739 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
Hmgb3O54879 C230057M02Rik-201ENSMUST00000212334 3306 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
Hmgb3O54879 Cd3e-201ENSMUST00000102832 1462 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
Hmgb3O54879 Ilf3-204ENSMUST00000213603 3430 ntAPPRIS ALT2 TSL 5 BASIC8.57□□□□□ -1.04
Hmgb3O54879 Lnpk-201ENSMUST00000064503 3195 ntAPPRIS P3 TSL 1 (best) BASIC8.57□□□□□ -1.04
Hmgb3O54879 Gm38192-201ENSMUST00000194364 1847 ntBASIC8.57□□□□□ -1.04
Hmgb3O54879 AC090962.2-201ENSMUST00000225064 1801 ntBASIC8.57□□□□□ -1.04
Hmgb3O54879 Loxl3-202ENSMUST00000101257 3252 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
Hmgb3O54879 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
Hmgb3O54879 Gm37909-201ENSMUST00000193157 2159 ntBASIC8.56□□□□□ -1.04
Hmgb3O54879 Olfr272-202ENSMUST00000107667 1936 ntAPPRIS P1 TSL 3 BASIC8.56□□□□□ -1.04
Hmgb3O54879 Gm26658-201ENSMUST00000181067 2500 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
Hmgb3O54879 Smpd4-219ENSMUST00000170366 2256 ntTSL 5 BASIC8.56□□□□□ -1.04
Hmgb3O54879 Pex5l-204ENSMUST00000108224 2721 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
Hmgb3O54879 Odf2-205ENSMUST00000113757 3082 ntAPPRIS ALT2 TSL 5 BASIC8.56□□□□□ -1.04
Hmgb3O54879 Scnn1b-201ENSMUST00000033161 2478 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
Hmgb3O54879 Fanca-202ENSMUST00000118395 3274 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
Hmgb3O54879 Xab2-201ENSMUST00000019614 2677 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
Hmgb3O54879 Gm11824-201ENSMUST00000120191 846 ntBASIC8.56□□□□□ -1.04
Hmgb3O54879 Csf1-204ENSMUST00000120654 821 ntTSL 3 BASIC8.56□□□□□ -1.04
Hmgb3O54879 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC8.56□□□□□ -1.04
Hmgb3O54879 Dnajb6-202ENSMUST00000012734 1024 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
Hmgb3O54879 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
Hmgb3O54879 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
Hmgb3O54879 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
Hmgb3O54879 Smlr1-201ENSMUST00000179685 669 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
Hmgb3O54879 Gm27184-201ENSMUST00000185095 607 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
Hmgb3O54879 Gm37981-201ENSMUST00000194280 535 ntBASIC8.56□□□□□ -1.04
Hmgb3O54879 Gm44323-201ENSMUST00000198689 129 ntBASIC8.56□□□□□ -1.04
Hmgb3O54879 Fxyd1-214ENSMUST00000206328 545 ntAPPRIS P1 TSL 3 BASIC8.56□□□□□ -1.04
Hmgb3O54879 Gm45909-201ENSMUST00000212413 1031 ntBASIC8.56□□□□□ -1.04
Hmgb3O54879 Gm1000-202ENSMUST00000222329 757 ntTSL 5 BASIC8.56□□□□□ -1.04
Hmgb3O54879 CT573034.1-201ENSMUST00000222983 313 ntBASIC8.56□□□□□ -1.04
Hmgb3O54879 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
Hmgb3O54879 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
Hmgb3O54879 BC049762-202ENSMUST00000065950 883 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
Hmgb3O54879 Ccl21a-201ENSMUST00000095114 870 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
Hmgb3O54879 Pex2-203ENSMUST00000164828 2051 ntAPPRIS P1 TSL 2 BASIC8.56□□□□□ -1.04
Hmgb3O54879 Fmo5-203ENSMUST00000107050 5197 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
Hmgb3O54879 C920021L13Rik-201ENSMUST00000120398 1723 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
Hmgb3O54879 Slc25a21-205ENSMUST00000217690 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC8.56□□□□□ -1.04
Hmgb3O54879 Slc35f6-201ENSMUST00000062962 3088 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
Hmgb3O54879 Cpne5-201ENSMUST00000024805 4344 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
Hmgb3O54879 Olfr71-203ENSMUST00000217544 2707 ntAPPRIS P1 TSL 5 BASIC8.56□□□□□ -1.04
Hmgb3O54879 Slco5a1-206ENSMUST00000147606 3615 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
Hmgb3O54879 Shc4-201ENSMUST00000042246 4059 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
Hmgb3O54879 Npas4-201ENSMUST00000056129 3277 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
Hmgb3O54879 Hspd1-ps4-201ENSMUST00000121815 1668 ntBASIC8.56□□□□□ -1.04
Hmgb3O54879 Gm11661-201ENSMUST00000121761 1327 ntBASIC8.55□□□□□ -1.04
Hmgb3O54879 Gm7103-201ENSMUST00000195642 1852 ntBASIC8.55□□□□□ -1.04
Hmgb3O54879 Nedd1-201ENSMUST00000020163 3534 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
Hmgb3O54879 Kng1-202ENSMUST00000039492 1985 ntAPPRIS P3 TSL 1 (best) BASIC8.55□□□□□ -1.04
Hmgb3O54879 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC8.55□□□□□ -1.04
Hmgb3O54879 Arl6ip5-201ENSMUST00000044681 1442 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
Hmgb3O54879 Tnip1-205ENSMUST00000108886 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC8.55□□□□□ -1.04
Hmgb3O54879 Pus7l-201ENSMUST00000049151 2840 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
Hmgb3O54879 Nrp2-201ENSMUST00000027112 4216 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
Hmgb3O54879 Calr4-201ENSMUST00000030285 1606 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
Hmgb3O54879 Rad51c-201ENSMUST00000007790 1632 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
Hmgb3O54879 Gab3-202ENSMUST00000114104 1705 ntAPPRIS ALT2 TSL 5 BASIC8.55□□□□□ -1.04
Hmgb3O54879 Il1f5-206ENSMUST00000168941 1722 ntAPPRIS P1 TSL 5 BASIC8.55□□□□□ -1.04
Hmgb3O54879 Gm37759-201ENSMUST00000194155 3246 ntBASIC8.55□□□□□ -1.04
Hmgb3O54879 Spen-201ENSMUST00000078886 12082 ntAPPRIS ALT2 TSL 5 BASIC8.55□□□□□ -1.04
Retrieved 100 of 76,532 protein–RNA pairs in 115.6 ms