Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Pop1-201ENSMUST00000052290 3395 ntAPPRIS P4 TSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 A930007I19Rik-201ENSMUST00000180737 2319 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Gm22937-201ENSMUST00000103954 131 ntBASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Gm5909-201ENSMUST00000119768 1281 ntBASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Gm11993-201ENSMUST00000121861 820 ntBASIC11.79□□□□□ -0.52
Smc1aQ9CU62 A230006K03Rik-202ENSMUST00000154958 901 ntTSL 5 BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Gm17058-201ENSMUST00000168951 928 ntTSL 5 BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Gm19246-201ENSMUST00000173599 255 ntBASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Gm8705-201ENSMUST00000180823 812 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 C630004L07Rik-201ENSMUST00000193236 1275 ntBASIC11.79□□□□□ -0.52
Smc1aQ9CU62 BC028471-201ENSMUST00000200937 520 ntTSL 2 BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Gm45085-201ENSMUST00000209100 441 ntBASIC11.79□□□□□ -0.52
Smc1aQ9CU62 4930431F10Rik-201ENSMUST00000213122 1157 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Olfr692-202ENSMUST00000217827 1126 ntBASIC11.79□□□□□ -0.52
Smc1aQ9CU62 BC106175-201ENSMUST00000218578 695 ntTSL 5 BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 AC129975.1-201ENSMUST00000224816 592 ntBASIC11.79□□□□□ -0.52
Smc1aQ9CU62 2210010C04Rik-201ENSMUST00000031931 2142 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 BC049762-202ENSMUST00000065950 883 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Naca-201ENSMUST00000073868 885 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Olfr525-201ENSMUST00000078103 1050 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Olfr692-201ENSMUST00000098152 1126 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Gramd1b-202ENSMUST00000118159 2781 ntTSL 5 BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Nectin4-203ENSMUST00000111286 3201 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 St5-204ENSMUST00000168005 3004 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Anxa3-205ENSMUST00000198631 1523 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Drg1-201ENSMUST00000020741 1546 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Pnpla3-201ENSMUST00000045289 4640 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Card14-201ENSMUST00000053245 3958 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Tmprss3-202ENSMUST00000114549 2872 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Sept2-201ENSMUST00000027495 3779 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Lrrc61-202ENSMUST00000114545 2913 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Socs6-202ENSMUST00000123826 2921 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Gm27177-201ENSMUST00000183339 2946 ntTSL 5 BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Creb3l4-201ENSMUST00000029547 1553 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Agbl5-201ENSMUST00000069705 2922 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Atp1a3-202ENSMUST00000102858 3895 ntTSL 2 BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Henmt1-203ENSMUST00000106586 1838 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Serpina3g-201ENSMUST00000043315 1803 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Tiam2-202ENSMUST00000169838 5725 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Abcc4-201ENSMUST00000036554 5715 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 Zfp872-201ENSMUST00000091508 1395 ntTSL 5 BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 N6amt1-204ENSMUST00000120284 3473 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 4930417O13Rik-203ENSMUST00000204911 3458 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Smc1aQ9CU62 AC174797.1-201ENSMUST00000224339 1649 ntBASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Mcm3-201ENSMUST00000053266 3031 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Lipg-201ENSMUST00000066532 3787 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Tmem150c-201ENSMUST00000063192 3084 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Aen-203ENSMUST00000107425 4956 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Gm42499-201ENSMUST00000196193 1412 ntBASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Pcdhb19-201ENSMUST00000059571 7138 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Ap5s1-201ENSMUST00000089506 1432 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Mov10-203ENSMUST00000106775 3584 ntTSL 5 BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Mov10-206ENSMUST00000166979 3584 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Ido1-202ENSMUST00000110667 1656 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Arhgap19-204ENSMUST00000177495 1652 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Slc40a1-201ENSMUST00000027137 3370 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Pex26-203ENSMUST00000120066 3861 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 4732487G21Rik-201ENSMUST00000181495 2664 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Mta1-202ENSMUST00000069690 2697 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Gripap1-201ENSMUST00000065932 3156 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Pitpnm2os2-203ENSMUST00000198466 2467 ntBASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Arfgap3-202ENSMUST00000226124 2461 ntAPPRIS ALT2 BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Pde2a-201ENSMUST00000163751 4218 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Svil-204ENSMUST00000127297 6243 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Eif2s2-201ENSMUST00000099173 2542 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 2300003K06Rik-201ENSMUST00000105054 1265 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Plac8-203ENSMUST00000112910 1224 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Snord23-201ENSMUST00000116828 109 ntBASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Gm14052-201ENSMUST00000121434 1031 ntBASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Tspan32os-201ENSMUST00000131740 975 ntTSL 2 BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Gm25604-201ENSMUST00000158359 133 ntBASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Gm26119-201ENSMUST00000175601 104 ntBASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Scgb2b7-201ENSMUST00000178258 520 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 4933417D19Rik-201ENSMUST00000181432 1229 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Gm44696-201ENSMUST00000181943 1229 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Gm5178-201ENSMUST00000219380 898 ntBASIC11.78□□□□□ -0.52
Smc1aQ9CU62 AC158388.3-202ENSMUST00000225517 775 ntBASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Crygd-201ENSMUST00000045028 613 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Gm8894-201ENSMUST00000074642 666 ntBASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Cux1-207ENSMUST00000176216 2821 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Ffar2-201ENSMUST00000053156 2301 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Hipk2-204ENSMUST00000160360 3907 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 AC165148.1-201ENSMUST00000224795 2372 ntBASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Gm42941-201ENSMUST00000200347 1321 ntBASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Wdr60-201ENSMUST00000039349 3721 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Gys1-206ENSMUST00000211150 2681 ntTSL 5 BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Gk2-201ENSMUST00000059657 1880 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 St7-204ENSMUST00000077080 1887 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 D2hgdh-201ENSMUST00000097633 3232 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Hrh1-201ENSMUST00000088987 3782 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Speer4b-201ENSMUST00000053257 2193 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Eef2k-204ENSMUST00000106489 3047 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Celsr2-201ENSMUST00000090558 10598 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Lpxn-201ENSMUST00000025601 1675 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 Gm26625-201ENSMUST00000181519 2538 ntTSL 5 BASIC11.78□□□□□ -0.52
Smc1aQ9CU62 F730311O21Rik-201ENSMUST00000189288 5447 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Smc1aQ9CU62 Gadl1-202ENSMUST00000119291 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Smc1aQ9CU62 Adar-205ENSMUST00000121094 2321 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Smc1aQ9CU62 Sh3gl2-204ENSMUST00000107189 3231 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Smc1aQ9CU62 Fam184b-201ENSMUST00000016023 4236 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 51.2 ms