Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Zfp775-201ENSMUST00000061720 4083 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Use1Q9CQ56 Gm30132-201ENSMUST00000212816 8757 ntTSL 5 BASIC9.92□□□□□ -0.82
Use1Q9CQ56 Nfkbiz-204ENSMUST00000114458 3627 ntAPPRIS P3 TSL 1 (best) BASIC9.92□□□□□ -0.82
Use1Q9CQ56 Rpap2-201ENSMUST00000065422 2268 ntAPPRIS P3 TSL 1 (best) BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Atxn1-203ENSMUST00000180110 3901 ntAPPRIS ALT2 TSL 1 (best) BASIC9.91□□□□□ -0.82
Use1Q9CQ56 AC122293.1-201ENSMUST00000218333 2231 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Lrrk2-201ENSMUST00000060642 8275 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Gm15943-201ENSMUST00000147638 3821 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Olfm3-202ENSMUST00000081752 4647 ntAPPRIS ALT1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Robo4-203ENSMUST00000115048 3392 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Kif2a-206ENSMUST00000159772 2570 ntTSL 5 BASIC9.91□□□□□ -0.82
Use1Q9CQ56 4930432K21Rik-201ENSMUST00000093375 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Ankrd36-201ENSMUST00000109855 1363 ntAPPRIS ALT2 TSL 1 (best) BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Ceacam9-201ENSMUST00000001984 1396 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Edn1-201ENSMUST00000021796 2139 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Edil3-201ENSMUST00000043111 5156 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Adar-203ENSMUST00000107405 5871 ntAPPRIS ALT2 TSL 1 (best) BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Helz-201ENSMUST00000075012 6218 ntAPPRIS P2 TSL 1 (best) BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Lypla1-203ENSMUST00000119612 529 ntTSL 3 BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Use1Q9CQ56 B9d1os-201ENSMUST00000137010 674 ntBASIC9.91□□□□□ -0.82
Use1Q9CQ56 Gzmn-201ENSMUST00000015587 956 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Gm16172-201ENSMUST00000156224 682 ntTSL 3 BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Gm24398-201ENSMUST00000157870 109 ntBASIC9.91□□□□□ -0.82
Use1Q9CQ56 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Gm16894-201ENSMUST00000181756 842 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Gm9211-201ENSMUST00000182882 975 ntBASIC9.91□□□□□ -0.82
Use1Q9CQ56 Gm29543-201ENSMUST00000188138 967 ntBASIC9.91□□□□□ -0.82
Use1Q9CQ56 Gm8918-201ENSMUST00000190587 1087 ntBASIC9.91□□□□□ -0.82
Use1Q9CQ56 Gm5542-201ENSMUST00000195485 1089 ntBASIC9.91□□□□□ -0.82
Use1Q9CQ56 Gm44759-201ENSMUST00000206057 430 ntTSL 3 BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Cdipt-204ENSMUST00000206346 806 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Use1Q9CQ56 1700026F02Rik-203ENSMUST00000211950 1082 ntTSL 5 BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Mnd1-201ENSMUST00000047368 875 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Ifnab-201ENSMUST00000071378 1058 ntAPPRIS P1 BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Gm23680-201ENSMUST00000083162 164 ntBASIC9.91□□□□□ -0.82
Use1Q9CQ56 Mx1-202ENSMUST00000113768 2695 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Casz1-201ENSMUST00000094464 4349 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Ldlr-201ENSMUST00000034713 4627 ntAPPRIS P2 TSL 1 (best) BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Gm7052-201ENSMUST00000167568 1512 ntBASIC9.91□□□□□ -0.82
Use1Q9CQ56 Triml2-202ENSMUST00000209200 1519 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Use1Q9CQ56 AC130823.1-201ENSMUST00000228929 1549 ntBASIC9.91□□□□□ -0.82
Use1Q9CQ56 Serpinb6a-203ENSMUST00000076532 1504 ntAPPRIS P1 TSL 5 BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Syt2-201ENSMUST00000121990 6879 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Zfp462-201ENSMUST00000030131 4823 ntAPPRIS ALT2 TSL 5 BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Man2c1-211ENSMUST00000160147 3820 ntAPPRIS P2 TSL 1 (best) BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Gm32219-201ENSMUST00000221234 1819 ntTSL 5 BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Tia1-201ENSMUST00000095752 3130 ntAPPRIS ALT1 TSL 5 BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Gpm6b-206ENSMUST00000112228 3083 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Lrtm1-203ENSMUST00000224760 3060 ntBASIC9.91□□□□□ -0.82
Use1Q9CQ56 P4ha1-201ENSMUST00000009789 4043 ntAPPRIS P3 TSL 1 (best) BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Zbtb43-201ENSMUST00000028125 4998 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Rangap1-203ENSMUST00000171115 2740 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Use1Q9CQ56 Fam3a-201ENSMUST00000015427 1427 ntAPPRIS P1 TSL 5 BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Asz1-201ENSMUST00000010940 1736 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Gm45867-201ENSMUST00000208201 2317 ntBASIC9.9□□□□□ -0.82
Use1Q9CQ56 1700047M11Rik-202ENSMUST00000189594 2607 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Tacc2-203ENSMUST00000084513 9029 ntAPPRIS P4 TSL 5 BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Cpsf4l-202ENSMUST00000100248 1375 ntAPPRIS ALT2 TSL 5 BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Capzb-201ENSMUST00000030518 1390 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Rep15-201ENSMUST00000036194 1662 ntAPPRIS P1 BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Dnm2-202ENSMUST00000091087 3450 ntAPPRIS ALT1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Myo1c-202ENSMUST00000102504 4659 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Scmh1-202ENSMUST00000064991 2548 ntAPPRIS ALT2 TSL 5 BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Dysf-215ENSMUST00000204591 6641 ntAPPRIS ALT2 TSL 5 BASIC9.9□□□□□ -0.82
Use1Q9CQ56 5830462I19Rik-201ENSMUST00000168137 3383 ntBASIC9.9□□□□□ -0.82
Use1Q9CQ56 Suclg2-204ENSMUST00000204224 3367 ntAPPRIS P3 TSL 1 (best) BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Cspg4-201ENSMUST00000035661 8121 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Use1Q9CQ56 n-R5s84-201ENSMUST00000122591 109 ntBASIC9.9□□□□□ -0.82
Use1Q9CQ56 Tsc22d1-206ENSMUST00000134109 801 ntTSL 2 BASIC9.9□□□□□ -0.82
Use1Q9CQ56 1700084C06Rik-201ENSMUST00000135674 750 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Aamdc-207ENSMUST00000138060 467 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Aamdc-209ENSMUST00000144858 380 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Gm11417-201ENSMUST00000150536 920 ntTSL 2 BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Pax4-202ENSMUST00000164519 1229 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Ccr6-204ENSMUST00000167956 1219 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Tmem229b-ps-201ENSMUST00000168554 506 ntBASIC9.9□□□□□ -0.82
Use1Q9CQ56 Pax4-203ENSMUST00000171089 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Gm20420-201ENSMUST00000173178 639 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Smlr1-201ENSMUST00000179685 669 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Smim22-207ENSMUST00000184439 382 ntAPPRIS P3 TSL 2 BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Gm44100-201ENSMUST00000204329 436 ntBASIC9.9□□□□□ -0.82
Use1Q9CQ56 4930447C11Rik-201ENSMUST00000204503 928 ntBASIC9.9□□□□□ -0.82
Use1Q9CQ56 Gm31520-203ENSMUST00000204874 647 ntTSL 3 BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Rpl15-ps5-201ENSMUST00000205636 605 ntBASIC9.9□□□□□ -0.82
Use1Q9CQ56 AC153152.3-201ENSMUST00000222188 1135 ntBASIC9.9□□□□□ -0.82
Use1Q9CQ56 Net1-206ENSMUST00000222504 447 ntTSL 3 BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Tff1-201ENSMUST00000024831 478 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Olfr354-201ENSMUST00000068475 1084 ntAPPRIS P1 BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Tspan8-202ENSMUST00000080630 1156 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Snrpg-201ENSMUST00000089558 1055 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Rsg1-201ENSMUST00000097813 985 ntAPPRIS P1 TSL 5 BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Snd1-206ENSMUST00000167201 3781 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Tnc-204ENSMUST00000107377 7100 ntAPPRIS P2 TSL 1 (best) BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Adcy3-201ENSMUST00000020984 4348 ntAPPRIS P3 TSL 1 (best) BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Snd1-201ENSMUST00000001460 3482 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Atcay-201ENSMUST00000047408 3736 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Gm12530-201ENSMUST00000152074 1759 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
Use1Q9CQ56 Zbtb3-201ENSMUST00000172175 2037 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Retrieved 100 of 76,532 protein–RNA pairs in 103.4 ms