Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Pole-202ENSMUST00000112481 1523 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Traf1P39428 Gm28035-201ENSMUST00000139454 4238 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
Traf1P39428 Gtf3c1-201ENSMUST00000055506 6961 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Traf1P39428 Sec14l1-202ENSMUST00000090433 4654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Traf1P39428 4933409D19Rik-201ENSMUST00000193674 1557 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Traf1P39428 Gm16348-202ENSMUST00000146654 2385 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Traf1P39428 Sptbn5-204ENSMUST00000156159 3625 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
Traf1P39428 Dhx34-201ENSMUST00000094816 4073 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Traf1P39428 Gatsl2-201ENSMUST00000016088 7367 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Traf1P39428 Arhgap24-205ENSMUST00000112853 2853 ntTSL 5 BASIC12.27□□□□□ -0.45
Traf1P39428 Gm24933-201ENSMUST00000103762 110 ntBASIC12.27□□□□□ -0.45
Traf1P39428 Gm23252-201ENSMUST00000103776 110 ntBASIC12.27□□□□□ -0.45
Traf1P39428 Srp14-202ENSMUST00000110862 587 ntTSL 2 BASIC12.27□□□□□ -0.45
Traf1P39428 Gm12950-201ENSMUST00000121683 417 ntBASIC12.27□□□□□ -0.45
Traf1P39428 Gm26313-201ENSMUST00000157770 308 ntBASIC12.27□□□□□ -0.45
Traf1P39428 Gm17226-201ENSMUST00000166637 780 ntTSL 3 BASIC12.27□□□□□ -0.45
Traf1P39428 Gm6612-201ENSMUST00000170777 395 ntBASIC12.27□□□□□ -0.45
Traf1P39428 Gm6686-201ENSMUST00000178455 258 ntBASIC12.27□□□□□ -0.45
Traf1P39428 Gm13272-201ENSMUST00000179425 811 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Traf1P39428 Gm26443-201ENSMUST00000179610 110 ntBASIC12.27□□□□□ -0.45
Traf1P39428 Gm37197-201ENSMUST00000195607 401 ntBASIC12.27□□□□□ -0.45
Traf1P39428 Gm18010-201ENSMUST00000203553 202 ntBASIC12.27□□□□□ -0.45
Traf1P39428 Chac2-201ENSMUST00000020553 1018 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Traf1P39428 Scnn1g-201ENSMUST00000000221 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Traf1P39428 Magoh-201ENSMUST00000030348 692 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Traf1P39428 Prl7b1-201ENSMUST00000080595 925 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Traf1P39428 P2rx7-202ENSMUST00000086247 712 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Traf1P39428 Olfr1230-201ENSMUST00000099787 918 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Traf1P39428 Glb1l2-207ENSMUST00000162702 2555 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Traf1P39428 AC122881.1-201ENSMUST00000225757 2695 ntBASIC12.27□□□□□ -0.45
Traf1P39428 Mms19-201ENSMUST00000026168 3162 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Traf1P39428 E2f8-201ENSMUST00000058745 3691 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Traf1P39428 Megf11-202ENSMUST00000093829 3652 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Traf1P39428 Ror2-202ENSMUST00000130235 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Traf1P39428 Myo15b-201ENSMUST00000040703 2825 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Traf1P39428 Emc1-201ENSMUST00000042096 4706 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Traf1P39428 Ctsb-201ENSMUST00000006235 4743 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Traf1P39428 Adcy6-201ENSMUST00000096224 6038 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Traf1P39428 Gm45089-201ENSMUST00000208082 2040 ntBASIC12.27□□□□□ -0.45
Traf1P39428 Myh10-203ENSMUST00000102611 7791 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Traf1P39428 4932438H23Rik-201ENSMUST00000035689 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Traf1P39428 Fbrs-201ENSMUST00000048896 2650 ntAPPRIS P2 TSL 5 BASIC12.26□□□□□ -0.45
Traf1P39428 Gm31108-201ENSMUST00000204101 1633 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Traf1P39428 Gm16677-201ENSMUST00000181229 2174 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Traf1P39428 Gm27174-201ENSMUST00000184493 2174 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Traf1P39428 Bmp3-203ENSMUST00000200388 6609 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Traf1P39428 Tnfaip3-201ENSMUST00000019997 4422 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Traf1P39428 Topors-201ENSMUST00000042575 3856 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Traf1P39428 Arpp21-223ENSMUST00000162097 3952 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Traf1P39428 Stau2-202ENSMUST00000054668 2907 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Traf1P39428 Limd1-201ENSMUST00000026269 4848 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Traf1P39428 4931423N10Rik-201ENSMUST00000028113 1842 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Traf1P39428 Mettl8-201ENSMUST00000090849 1842 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Traf1P39428 Eif2s3y-201ENSMUST00000091197 1836 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Traf1P39428 Gm5697-201ENSMUST00000122295 2482 ntBASIC12.26□□□□□ -0.45
Traf1P39428 Gm45041-201ENSMUST00000207366 3108 ntBASIC12.26□□□□□ -0.45
Traf1P39428 Mir671-201ENSMUST00000102432 98 ntBASIC12.26□□□□□ -0.45
Traf1P39428 Tpm1-205ENSMUST00000113685 1208 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Traf1P39428 Gm12461-201ENSMUST00000120231 1239 ntBASIC12.26□□□□□ -0.45
Traf1P39428 2210408F21Rik-209ENSMUST00000146778 579 ntTSL 5 BASIC12.26□□□□□ -0.45
Traf1P39428 Gzmn-201ENSMUST00000015587 956 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Traf1P39428 Bud31-203ENSMUST00000160075 928 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
Traf1P39428 Gm21958-201ENSMUST00000178832 648 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
Traf1P39428 Gm4858-201ENSMUST00000179064 735 ntTSL 5 BASIC12.26□□□□□ -0.45
Traf1P39428 Gm7765-201ENSMUST00000182585 974 ntBASIC12.26□□□□□ -0.45
Traf1P39428 Gm27833-201ENSMUST00000184285 124 ntBASIC12.26□□□□□ -0.45
Traf1P39428 Gm18182-201ENSMUST00000191380 1251 ntBASIC12.26□□□□□ -0.45
Traf1P39428 Gm5907-202ENSMUST00000210969 661 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Traf1P39428 Gm45745-201ENSMUST00000211447 1180 ntBASIC12.26□□□□□ -0.45
Traf1P39428 CT030011.1-201ENSMUST00000221959 264 ntTSL 5 BASIC12.26□□□□□ -0.45
Traf1P39428 AC152169.1-201ENSMUST00000223901 701 ntBASIC12.26□□□□□ -0.45
Traf1P39428 Psca-201ENSMUST00000023265 860 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Traf1P39428 Slc1a4-202ENSMUST00000109594 3926 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Traf1P39428 BC052040-201ENSMUST00000110918 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Traf1P39428 Pfn4-202ENSMUST00000178879 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Traf1P39428 Gm42851-201ENSMUST00000201325 1411 ntBASIC12.26□□□□□ -0.45
Traf1P39428 Spata5-201ENSMUST00000029277 2890 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Traf1P39428 Eef2k-201ENSMUST00000047875 6580 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Traf1P39428 Rbm47-202ENSMUST00000094757 4643 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Traf1P39428 Rpap1-201ENSMUST00000048493 4744 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Traf1P39428 Rimbp2-204ENSMUST00000198941 6446 ntAPPRIS P3 TSL 2 BASIC12.26□□□□□ -0.45
Traf1P39428 Ddx11-201ENSMUST00000163605 4149 ntAPPRIS P2 TSL 5 BASIC12.26□□□□□ -0.45
Traf1P39428 Megf8-201ENSMUST00000128119 10040 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Traf1P39428 Kcne2-201ENSMUST00000047383 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Traf1P39428 9530026P05Rik-204ENSMUST00000204449 1740 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Traf1P39428 Sphk2-202ENSMUST00000107737 3548 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Traf1P39428 Srgap3-202ENSMUST00000088373 8887 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Traf1P39428 Gm45124-201ENSMUST00000206723 2755 ntBASIC12.25□□□□□ -0.45
Traf1P39428 Gpr37-201ENSMUST00000054867 4974 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Traf1P39428 Npy1r-201ENSMUST00000039303 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Traf1P39428 Gfm2-202ENSMUST00000042084 3074 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Traf1P39428 Phf24-203ENSMUST00000107976 6538 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Traf1P39428 Bcl2l11-204ENSMUST00000103211 672 ntAPPRIS ALT2 TSL 2 BASIC12.25□□□□□ -0.45
Traf1P39428 Rpl17-ps1-201ENSMUST00000119156 552 ntBASIC12.25□□□□□ -0.45
Traf1P39428 Gm16235-202ENSMUST00000149562 206 ntTSL 3 BASIC12.25□□□□□ -0.45
Traf1P39428 Gm15258-201ENSMUST00000153801 741 ntBASIC12.25□□□□□ -0.45
Traf1P39428 Tstd1-201ENSMUST00000171362 551 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
Traf1P39428 Rpl15-ps2-201ENSMUST00000184247 613 ntBASIC12.25□□□□□ -0.45
Traf1P39428 Gm28893-201ENSMUST00000190951 1108 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Traf1P39428 Gm8234-201ENSMUST00000198523 1107 ntBASIC12.25□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 74.3 ms