Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Rab29-201ENSMUST00000027693 1226 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Upf3bQ3ULL6 Olfr60-201ENSMUST00000075470 936 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Upf3bQ3ULL6 Atf7-201ENSMUST00000096143 390 ntBASIC11.31□□□□□ -0.6
Upf3bQ3ULL6 Gpr37-201ENSMUST00000054867 4974 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Upf3bQ3ULL6 Psat1-205ENSMUST00000162053 2291 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Upf3bQ3ULL6 5330413D20Rik-201ENSMUST00000208649 1416 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Upf3bQ3ULL6 Gm14005-210ENSMUST00000225087 1413 ntBASIC11.31□□□□□ -0.6
Upf3bQ3ULL6 Txlng-201ENSMUST00000041370 3862 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Upf3bQ3ULL6 Gal3st4-201ENSMUST00000100530 3162 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Upf3bQ3ULL6 Gm38025-201ENSMUST00000193926 2308 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Upf3bQ3ULL6 Pigo-202ENSMUST00000098109 4239 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Upf3bQ3ULL6 Gm16982-201ENSMUST00000181275 2620 ntTSL 2 BASIC11.31□□□□□ -0.6
Upf3bQ3ULL6 Nrg1-213ENSMUST00000208617 2787 ntTSL 5 BASIC11.31□□□□□ -0.6
Upf3bQ3ULL6 Kcng4-201ENSMUST00000061828 3806 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Upf3bQ3ULL6 Gm26908-201ENSMUST00000181856 1637 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Upf3bQ3ULL6 AC151836.1-201ENSMUST00000228730 1637 ntBASIC11.31□□□□□ -0.6
Upf3bQ3ULL6 Slc13a5-206ENSMUST00000208912 1751 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Upf3bQ3ULL6 AC164092.1-201ENSMUST00000215635 2232 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Upf3bQ3ULL6 Pex19-202ENSMUST00000111252 2844 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Upf3bQ3ULL6 Mkrn1-204ENSMUST00000114823 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Upf3bQ3ULL6 Phtf1os-201ENSMUST00000160110 4046 ntBASIC11.31□□□□□ -0.6
Upf3bQ3ULL6 Gm16070-201ENSMUST00000127328 5210 ntTSL 2 BASIC11.31□□□□□ -0.6
Upf3bQ3ULL6 Tram2-201ENSMUST00000037998 6492 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Dlec1-208ENSMUST00000165231 5263 ntAPPRIS P2 TSL 5 BASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Tcaf1-202ENSMUST00000045140 5256 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Hrh1-201ENSMUST00000088987 3782 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Armt1-201ENSMUST00000095893 2429 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Arpp21-217ENSMUST00000161412 1687 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Trh-201ENSMUST00000006046 1384 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Sh2d3c-202ENSMUST00000113242 3107 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Lyn-201ENSMUST00000041377 3463 ntAPPRIS ALT1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Ttc1-201ENSMUST00000048578 1438 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Gm24791-201ENSMUST00000104284 131 ntBASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Ifitm7-201ENSMUST00000117803 853 ntAPPRIS P5 TSL 1 (best) BASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Gm11993-201ENSMUST00000121861 820 ntBASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Saxo2-202ENSMUST00000126478 430 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Nudt12os-201ENSMUST00000145848 939 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Gm16547-201ENSMUST00000159474 293 ntBASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Ccr6-204ENSMUST00000167956 1219 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Adh6-ps1-202ENSMUST00000196293 754 ntBASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Gm42751-201ENSMUST00000198065 559 ntBASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Gm42803-201ENSMUST00000201051 451 ntBASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Gm43811-201ENSMUST00000202862 695 ntBASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Gm7959-201ENSMUST00000221823 1078 ntBASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 AC154806.7-201ENSMUST00000227998 202 ntBASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Gm9758-201ENSMUST00000035980 1167 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 2010001K21Rik-201ENSMUST00000060680 519 ntBASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Dido1-204ENSMUST00000103055 4613 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Phf21a-205ENSMUST00000111291 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Ppp1r17-201ENSMUST00000052827 1757 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Pdcl-202ENSMUST00000112940 3056 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Rasgrp4-213ENSMUST00000204845 3182 ntTSL 5 BASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Mypn-201ENSMUST00000095580 5246 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Oas1d-201ENSMUST00000044224 2021 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Nos1ap-203ENSMUST00000160466 1533 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Upf3bQ3ULL6 Gm15987-201ENSMUST00000141700 2231 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Bcl7a-202ENSMUST00000117971 4642 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Oxsm-201ENSMUST00000022311 3759 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Ankrd36-201ENSMUST00000109855 1363 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Uimc1-204ENSMUST00000127195 2936 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Olfr707-205ENSMUST00000214112 1735 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Ap1m2-201ENSMUST00000003397 1706 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Slit2-202ENSMUST00000170109 7758 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Slit2-217ENSMUST00000174421 7785 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 1600014C10Rik-202ENSMUST00000165308 3335 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 1600014C10Rik-204ENSMUST00000178207 3341 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Gm45699-201ENSMUST00000212838 1576 ntTSL 2 BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Rbm8a-201ENSMUST00000048915 2608 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Tiam2-201ENSMUST00000072156 6127 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Aplp2-202ENSMUST00000079758 3504 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Ppp1r26-205ENSMUST00000189694 5463 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Ppp1r26-201ENSMUST00000040324 5466 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Prdm16-203ENSMUST00000097759 8544 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Slc10a7-201ENSMUST00000034111 3595 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Smarca2-201ENSMUST00000025862 5921 ntAPPRIS P2 TSL 5 BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Fcrl1-202ENSMUST00000163661 1649 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Gphb5-201ENSMUST00000051079 1612 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Ighv10-1-201ENSMUST00000103492 359 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Fam107b-202ENSMUST00000115052 861 ntTSL 3 BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Gm11824-201ENSMUST00000120191 846 ntBASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Gm16178-201ENSMUST00000129408 677 ntTSL 2 BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Gm26208-201ENSMUST00000158677 124 ntBASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Gm17606-201ENSMUST00000169818 234 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Gm29642-201ENSMUST00000186170 921 ntTSL 2 BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 P4htm-204ENSMUST00000193621 1297 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Gm8625-201ENSMUST00000194185 1077 ntBASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Gm43564-201ENSMUST00000196185 211 ntBASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Gm20186-201ENSMUST00000201775 737 ntTSL 3 BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 1700012D14Rik-204ENSMUST00000210788 547 ntTSL 3 BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Tnk2-207ENSMUST00000115126 4358 ntTSL 5 BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Mettl8-201ENSMUST00000090849 1842 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Tbc1d17-201ENSMUST00000047085 8750 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Gm13169-201ENSMUST00000122090 1459 ntBASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Kcnj9-201ENSMUST00000062387 3857 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Gm10829-201ENSMUST00000202084 2988 ntBASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Ecsit-204ENSMUST00000180180 1676 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Gm37160-201ENSMUST00000193081 1689 ntBASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Zfp330-201ENSMUST00000034147 1675 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Ddx52-201ENSMUST00000049257 3194 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Nfkbiz-201ENSMUST00000036273 4115 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 69.4 ms