Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Axin2-202ENSMUST00000106711 2551 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Traf1P39428 Rpe65-202ENSMUST00000196999 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Traf1P39428 Rfesd-201ENSMUST00000050997 2807 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Traf1P39428 Pdcl-202ENSMUST00000112940 3056 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Traf1P39428 Pomt1-201ENSMUST00000036473 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Traf1P39428 Clip1-204ENSMUST00000111564 5609 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Traf1P39428 Il1rap-202ENSMUST00000096129 4438 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Traf1P39428 BC049352-203ENSMUST00000171799 1714 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Traf1P39428 Apbb1-217ENSMUST00000191011 2712 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Traf1P39428 Slc17a5-201ENSMUST00000052441 3236 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Traf1P39428 Nfe2l1-203ENSMUST00000107658 4219 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Traf1P39428 Gm42641-202ENSMUST00000160217 4248 ntAPPRIS P5 TSL 2 BASIC12.29□□□□□ -0.44
Traf1P39428 Disp1-201ENSMUST00000003035 4984 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Traf1P39428 Tasp1-203ENSMUST00000110079 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Traf1P39428 Bcl11a-204ENSMUST00000118955 1505 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Traf1P39428 4933425M03Rik-201ENSMUST00000195991 1544 ntBASIC12.29□□□□□ -0.44
Traf1P39428 Ighv1-50-201ENSMUST00000103521 390 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Traf1P39428 Olfr1263-201ENSMUST00000111507 1029 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Traf1P39428 Ptgds-203ENSMUST00000114259 775 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
Traf1P39428 Mir1249-201ENSMUST00000116791 98 ntBASIC12.29□□□□□ -0.44
Traf1P39428 Gm14006-201ENSMUST00000122132 981 ntBASIC12.29□□□□□ -0.44
Traf1P39428 Gm7572-201ENSMUST00000182616 766 ntBASIC12.29□□□□□ -0.44
Traf1P39428 Mir6387-201ENSMUST00000184042 108 ntBASIC12.29□□□□□ -0.44
Traf1P39428 Gm37301-201ENSMUST00000195412 568 ntBASIC12.29□□□□□ -0.44
Traf1P39428 Gm18555-201ENSMUST00000197935 584 ntBASIC12.29□□□□□ -0.44
Traf1P39428 Gm5865-201ENSMUST00000198713 637 ntBASIC12.29□□□□□ -0.44
Traf1P39428 Gm42859-201ENSMUST00000199572 193 ntBASIC12.29□□□□□ -0.44
Traf1P39428 Gm1000-202ENSMUST00000222329 757 ntTSL 5 BASIC12.29□□□□□ -0.44
Traf1P39428 AC125070.1-201ENSMUST00000223523 555 ntTSL 5 BASIC12.29□□□□□ -0.44
Traf1P39428 AC121567.1-201ENSMUST00000227213 842 ntBASIC12.29□□□□□ -0.44
Traf1P39428 Hcst-201ENSMUST00000075062 442 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Traf1P39428 Matn2-205ENSMUST00000227759 3569 ntAPPRIS ALT2 BASIC12.29□□□□□ -0.44
Traf1P39428 Gm43720-201ENSMUST00000159067 6411 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Traf1P39428 Gm20089-201ENSMUST00000192391 2084 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Traf1P39428 Zfp354a-204ENSMUST00000109122 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Traf1P39428 Krt33b-201ENSMUST00000073890 1581 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Traf1P39428 Nrap-205ENSMUST00000167239 4752 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Traf1P39428 Prorsd1-202ENSMUST00000133103 2126 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Traf1P39428 Usp17le-202ENSMUST00000211384 1885 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Traf1P39428 Zdhhc21-201ENSMUST00000030110 8763 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Traf1P39428 Ldb3-202ENSMUST00000022328 2468 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Traf1P39428 Eps8l1-204ENSMUST00000163893 3868 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Traf1P39428 Megf11-203ENSMUST00000118485 3944 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Traf1P39428 Tmc5-203ENSMUST00000121715 3906 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Traf1P39428 Pigm-201ENSMUST00000052455 7554 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Traf1P39428 L1cam-202ENSMUST00000102871 5113 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Traf1P39428 Gm8122-201ENSMUST00000165988 1404 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Traf1P39428 Nr1i2-201ENSMUST00000023504 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Traf1P39428 Tmem88b-201ENSMUST00000097742 3471 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Traf1P39428 Camk1d-201ENSMUST00000044009 6962 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Traf1P39428 Arhgap25-201ENSMUST00000071024 2635 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Traf1P39428 Sorbs3-201ENSMUST00000022682 2914 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Traf1P39428 Cit-202ENSMUST00000102560 6213 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Traf1P39428 Vmn2r18-201ENSMUST00000165928 2367 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Traf1P39428 Pou2f1-206ENSMUST00000111429 2679 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Traf1P39428 Ablim2-204ENSMUST00000114204 2953 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Traf1P39428 Itgal-204ENSMUST00000120857 4533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Traf1P39428 Azin1-203ENSMUST00000110329 4217 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
Traf1P39428 Gm28624-201ENSMUST00000186430 2131 ntBASIC12.28□□□□□ -0.44
Traf1P39428 Gm43713-201ENSMUST00000198251 1896 ntTSL 5 BASIC12.28□□□□□ -0.44
Traf1P39428 Ighv1-12-201ENSMUST00000103500 294 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Traf1P39428 Sh3gl2-202ENSMUST00000107184 671 ntTSL 2 BASIC12.28□□□□□ -0.44
Traf1P39428 Gm5510-201ENSMUST00000117826 486 ntBASIC12.28□□□□□ -0.44
Traf1P39428 Gm13204-201ENSMUST00000120110 821 ntBASIC12.28□□□□□ -0.44
Traf1P39428 Prelid3b-203ENSMUST00000120822 622 ntTSL 3 BASIC12.28□□□□□ -0.44
Traf1P39428 Znrd1-202ENSMUST00000172518 710 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Traf1P39428 Gm5801-201ENSMUST00000182247 780 ntBASIC12.28□□□□□ -0.44
Traf1P39428 Auts2-216ENSMUST00000185450 144 ntTSL 5 BASIC12.28□□□□□ -0.44
Traf1P39428 Trav18-202ENSMUST00000186573 325 ntAPPRIS ALT2 BASIC12.28□□□□□ -0.44
Traf1P39428 Gm28746-201ENSMUST00000187453 380 ntBASIC12.28□□□□□ -0.44
Traf1P39428 Gm35584-201ENSMUST00000191767 641 ntTSL 5 BASIC12.28□□□□□ -0.44
Traf1P39428 Gm7445-201ENSMUST00000192115 340 ntBASIC12.28□□□□□ -0.44
Traf1P39428 Gm8625-201ENSMUST00000194185 1077 ntBASIC12.28□□□□□ -0.44
Traf1P39428 Gm20186-201ENSMUST00000201775 737 ntTSL 3 BASIC12.28□□□□□ -0.44
Traf1P39428 Gm5881-201ENSMUST00000204737 367 ntBASIC12.28□□□□□ -0.44
Traf1P39428 AC116797.2-202ENSMUST00000223587 1017 ntBASIC12.28□□□□□ -0.44
Traf1P39428 AC161172.1-201ENSMUST00000227801 486 ntBASIC12.28□□□□□ -0.44
Traf1P39428 Nkg7-201ENSMUST00000070518 881 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Traf1P39428 Gm37057-201ENSMUST00000192624 1916 ntBASIC12.28□□□□□ -0.44
Traf1P39428 Kat7-205ENSMUST00000107734 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Traf1P39428 Habp2-201ENSMUST00000078284 2314 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Traf1P39428 Gpr37-202ENSMUST00000200812 3035 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Traf1P39428 Rbbp5-201ENSMUST00000027700 3385 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Traf1P39428 Rnf40-206ENSMUST00000206914 3735 ntTSL 5 BASIC12.28□□□□□ -0.44
Traf1P39428 Tceanc-202ENSMUST00000112188 4050 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Traf1P39428 Smok3a-201ENSMUST00000085886 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Traf1P39428 Ttll5-202ENSMUST00000040273 4147 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Traf1P39428 AC164161.2-201ENSMUST00000217446 1730 ntTSL 5 BASIC12.28□□□□□ -0.44
Traf1P39428 Myadm-202ENSMUST00000164553 2799 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Traf1P39428 Bsnd-201ENSMUST00000054472 2756 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Traf1P39428 Dctn1-203ENSMUST00000113913 4163 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Traf1P39428 Pa2g4-202ENSMUST00000131728 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Traf1P39428 Gm15271-201ENSMUST00000134627 2110 ntTSL 5 BASIC12.28□□□□□ -0.44
Traf1P39428 Gcsam-202ENSMUST00000161347 1796 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Traf1P39428 Tmem181b-ps-201ENSMUST00000167717 1413 ntBASIC12.28□□□□□ -0.44
Traf1P39428 Pcdh10-202ENSMUST00000170695 8234 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Traf1P39428 Mefv-202ENSMUST00000100222 3249 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Traf1P39428 Mcf2l-202ENSMUST00000098927 3215 ntTSL 5 BASIC12.28□□□□□ -0.44
Traf1P39428 Lztr1-202ENSMUST00000115681 3394 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
Traf1P39428 Hsd3b3-204ENSMUST00000107019 1533 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 49.2 ms