Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm9244-201ENSMUST00000056767 2129 ntBASIC8.64□□□□□ -1.03
Hoxd3P09027 Snu13-202ENSMUST00000080622 1283 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hoxd3P09027 Olfr1453-201ENSMUST00000087773 924 ntAPPRIS P1 BASIC8.64□□□□□ -1.03
Hoxd3P09027 Olfr1079-201ENSMUST00000099882 948 ntAPPRIS P2 BASIC8.64□□□□□ -1.03
Hoxd3P09027 Nefl-201ENSMUST00000022639 3380 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hoxd3P09027 Polm-201ENSMUST00000020767 2924 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hoxd3P09027 Arhgef10-202ENSMUST00000110800 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hoxd3P09027 Bmp4-202ENSMUST00000100676 1633 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hoxd3P09027 Golga2-202ENSMUST00000100194 4373 ntAPPRIS P4 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hoxd3P09027 Frmd4a-216ENSMUST00000176828 4355 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
Hoxd3P09027 Gm20696-201ENSMUST00000155466 3560 ntAPPRIS P1 TSL 2 BASIC8.64□□□□□ -1.03
Hoxd3P09027 E030013I19Rik-201ENSMUST00000148089 2754 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
Hoxd3P09027 Zc3h12a-201ENSMUST00000036188 2755 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hoxd3P09027 Serpinb9c-202ENSMUST00000110284 1575 ntAPPRIS P3 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hoxd3P09027 Gm6024-201ENSMUST00000117850 1558 ntBASIC8.64□□□□□ -1.03
Hoxd3P09027 D630008O14Rik-201ENSMUST00000144260 1568 ntTSL 2 BASIC8.64□□□□□ -1.03
Hoxd3P09027 Fam189b-201ENSMUST00000041913 3083 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hoxd3P09027 Rbl2-210ENSMUST00000211136 4504 ntAPPRIS ALT2 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hoxd3P09027 Srrm4-201ENSMUST00000076124 7472 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hoxd3P09027 Gm4869-201ENSMUST00000197549 2955 ntAPPRIS P1 TSL 5 BASIC8.64□□□□□ -1.03
Hoxd3P09027 Mfsd4b5-202ENSMUST00000073618 2978 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
Hoxd3P09027 Vcp-201ENSMUST00000030164 3316 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hoxd3P09027 4933411O13Rik-201ENSMUST00000050665 1464 ntBASIC8.64□□□□□ -1.03
Hoxd3P09027 Nfia-202ENSMUST00000075448 9526 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
Hoxd3P09027 Tpx2-206ENSMUST00000164120 4365 ntAPPRIS P1 TSL 5 BASIC8.64□□□□□ -1.03
Hoxd3P09027 Btrc-209ENSMUST00000224478 2194 ntBASIC8.63□□□□□ -1.03
Hoxd3P09027 Pcdhgb4-202ENSMUST00000195363 4665 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hoxd3P09027 Rap1gap-201ENSMUST00000047243 3247 ntAPPRIS P3 TSL 5 BASIC8.63□□□□□ -1.03
Hoxd3P09027 Prdm9-205ENSMUST00000147532 1447 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
Hoxd3P09027 Eef1a1-201ENSMUST00000042235 1794 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hoxd3P09027 4921522P10Rik-201ENSMUST00000048606 2101 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
Hoxd3P09027 Art2b-202ENSMUST00000209526 2819 ntAPPRIS ALT2 TSL 5 BASIC8.63□□□□□ -1.03
Hoxd3P09027 Far2-201ENSMUST00000032443 3480 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hoxd3P09027 Timeless-201ENSMUST00000055539 4457 ntAPPRIS P3 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hoxd3P09027 Gm5308-201ENSMUST00000196752 1354 ntBASIC8.63□□□□□ -1.03
Hoxd3P09027 Akr1c6-201ENSMUST00000021630 1396 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hoxd3P09027 Poc1a-211ENSMUST00000217213 1398 ntTSL 5 BASIC8.63□□□□□ -1.03
Hoxd3P09027 Apon-201ENSMUST00000060782 1397 ntAPPRIS P1 TSL 2 BASIC8.63□□□□□ -1.03
Hoxd3P09027 Gm34425-201ENSMUST00000216269 3079 ntTSL 5 BASIC8.63□□□□□ -1.03
Hoxd3P09027 Slc25a51-202ENSMUST00000116341 4438 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hoxd3P09027 Pdgfrb-201ENSMUST00000025522 5407 ntAPPRIS P2 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hoxd3P09027 Ehbp1-202ENSMUST00000109563 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hoxd3P09027 Esrp1-204ENSMUST00000108313 3696 ntTSL 5 BASIC8.63□□□□□ -1.03
Hoxd3P09027 Olfr239-202ENSMUST00000213731 3690 ntTSL 5 BASIC8.63□□□□□ -1.03
Hoxd3P09027 Madd-202ENSMUST00000066473 5974 ntAPPRIS ALT2 TSL 5 BASIC8.63□□□□□ -1.03
Hoxd3P09027 Gm43334-201ENSMUST00000197740 1318 ntBASIC8.63□□□□□ -1.03
Hoxd3P09027 Rabl2-202ENSMUST00000094056 1322 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
Hoxd3P09027 Cacna1c-224ENSMUST00000219018 7516 ntTSL 5 BASIC8.63□□□□□ -1.03
Hoxd3P09027 AC131120.1-201ENSMUST00000217728 1617 ntBASIC8.63□□□□□ -1.03
Hoxd3P09027 Jade1-201ENSMUST00000026865 5481 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
Hoxd3P09027 Zfp41-204ENSMUST00000161785 3540 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hoxd3P09027 Trbv3-201ENSMUST00000103264 455 ntAPPRIS P1 BASIC8.63□□□□□ -1.03
Hoxd3P09027 Vbp1-202ENSMUST00000114070 632 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
Hoxd3P09027 Gm12460-201ENSMUST00000117147 357 ntBASIC8.63□□□□□ -1.03
Hoxd3P09027 Gm9673-201ENSMUST00000119287 781 ntBASIC8.63□□□□□ -1.03
Hoxd3P09027 Sult1b1-203ENSMUST00000120150 1213 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hoxd3P09027 Gm4917-201ENSMUST00000121452 650 ntBASIC8.63□□□□□ -1.03
Hoxd3P09027 C1qtnf7-202ENSMUST00000121872 1283 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hoxd3P09027 Gm13941-201ENSMUST00000127918 736 ntAPPRIS P1 TSL 3 BASIC8.63□□□□□ -1.03
Hoxd3P09027 Zfp133-ps-204ENSMUST00000149523 424 ntTSL 3 BASIC8.63□□□□□ -1.03
Hoxd3P09027 Gm12406-201ENSMUST00000155382 697 ntTSL 3 BASIC8.63□□□□□ -1.03
Hoxd3P09027 Obox6-ps1-201ENSMUST00000176658 1042 ntBASIC8.63□□□□□ -1.03
Hoxd3P09027 E030018B13Rik-201ENSMUST00000177638 1015 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hoxd3P09027 AC238811.4-201ENSMUST00000178019 1246 ntBASIC8.63□□□□□ -1.03
Hoxd3P09027 Gm21844-201ENSMUST00000178699 663 ntTSL 3 BASIC8.63□□□□□ -1.03
Hoxd3P09027 AC238940.3-201ENSMUST00000178830 1246 ntBASIC8.63□□□□□ -1.03
Hoxd3P09027 Gm9081-201ENSMUST00000182346 991 ntBASIC8.63□□□□□ -1.03
Hoxd3P09027 Gm3671-201ENSMUST00000182463 1007 ntBASIC8.63□□□□□ -1.03
Hoxd3P09027 Gm28929-201ENSMUST00000185330 1193 ntBASIC8.63□□□□□ -1.03
Hoxd3P09027 Krtap6-3-202ENSMUST00000185581 520 ntAPPRIS P1 BASIC8.63□□□□□ -1.03
Hoxd3P09027 A930036K24Rik-201ENSMUST00000194146 1200 ntBASIC8.63□□□□□ -1.03
Hoxd3P09027 Gm30946-201ENSMUST00000198288 724 ntBASIC8.63□□□□□ -1.03
Hoxd3P09027 Olfr8-202ENSMUST00000203851 1009 ntAPPRIS P1 TSL 3 BASIC8.63□□□□□ -1.03
Hoxd3P09027 Itgax-203ENSMUST00000205460 1215 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
Hoxd3P09027 4933402C05Rik-201ENSMUST00000208189 1035 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
Hoxd3P09027 Gm31812-201ENSMUST00000210323 1170 ntTSL 3 BASIC8.63□□□□□ -1.03
Hoxd3P09027 CT030166.5-201ENSMUST00000222249 420 ntBASIC8.63□□□□□ -1.03
Hoxd3P09027 CT025551.1-201ENSMUST00000223996 692 ntBASIC8.63□□□□□ -1.03
Hoxd3P09027 AC122035.1-201ENSMUST00000227576 1016 ntBASIC8.63□□□□□ -1.03
Hoxd3P09027 AC132833.4-201ENSMUST00000228313 203 ntBASIC8.63□□□□□ -1.03
Hoxd3P09027 Ndufb4-201ENSMUST00000023514 971 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hoxd3P09027 Rpl3l-201ENSMUST00000045186 1033 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
Hoxd3P09027 Fam212a-201ENSMUST00000048568 1025 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hoxd3P09027 Tmem69-201ENSMUST00000069674 974 ntAPPRIS P1 TSL 2 BASIC8.63□□□□□ -1.03
Hoxd3P09027 Olfr889-201ENSMUST00000072290 945 ntTSL 5 BASIC8.63□□□□□ -1.03
Hoxd3P09027 Olfr47-201ENSMUST00000078057 1059 ntAPPRIS P1 BASIC8.63□□□□□ -1.03
Hoxd3P09027 Krtap6-3-201ENSMUST00000079151 444 ntBASIC8.63□□□□□ -1.03
Hoxd3P09027 Naa10-202ENSMUST00000096316 892 ntAPPRIS ALT2 TSL 2 BASIC8.63□□□□□ -1.03
Hoxd3P09027 Meltf-201ENSMUST00000023464 4133 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hoxd3P09027 Gm4224-201ENSMUST00000211557 1594 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
Hoxd3P09027 Tbc1d17-201ENSMUST00000047085 8750 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hoxd3P09027 Slc5a8-201ENSMUST00000020255 5331 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hoxd3P09027 Anxa9-202ENSMUST00000107183 1872 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hoxd3P09027 Gm6157-201ENSMUST00000199935 1897 ntBASIC8.63□□□□□ -1.03
Hoxd3P09027 Zfp410-215ENSMUST00000222832 1859 ntTSL 2 BASIC8.63□□□□□ -1.03
Hoxd3P09027 Itga11-201ENSMUST00000034774 4969 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hoxd3P09027 Zc3h18-205ENSMUST00000176629 3672 ntAPPRIS ALT2 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hoxd3P09027 Gm45776-201ENSMUST00000212366 1522 ntBASIC8.63□□□□□ -1.03
Hoxd3P09027 Dnali1-201ENSMUST00000036383 2133 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Hoxd3P09027 Serpine1-201ENSMUST00000041388 3011 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
Retrieved 100 of 76,532 protein–RNA pairs in 56.6 ms