Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Igll1-201ENSMUST00000100136 870 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
Usp40Q8BWR4 Gm12377-201ENSMUST00000118656 252 ntBASIC14.46□□□□□ -0.09
Usp40Q8BWR4 Gm15472-201ENSMUST00000141652 847 ntTSL 5 BASIC14.46□□□□□ -0.09
Usp40Q8BWR4 Mir7088-201ENSMUST00000184227 86 ntBASIC14.46□□□□□ -0.09
Usp40Q8BWR4 Gm29487-201ENSMUST00000190146 256 ntBASIC14.46□□□□□ -0.09
Usp40Q8BWR4 Gm2316-201ENSMUST00000190613 921 ntBASIC14.46□□□□□ -0.09
Usp40Q8BWR4 Gm42133-201ENSMUST00000196076 637 ntTSL 3 BASIC14.46□□□□□ -0.09
Usp40Q8BWR4 Fos-201ENSMUST00000021674 2108 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Usp40Q8BWR4 CU025215.1-201ENSMUST00000222986 603 ntBASIC14.46□□□□□ -0.09
Usp40Q8BWR4 Gm5513-201ENSMUST00000072982 1218 ntBASIC14.46□□□□□ -0.09
Usp40Q8BWR4 Proca1-202ENSMUST00000078099 1254 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Usp40Q8BWR4 Skp2-201ENSMUST00000096482 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Usp40Q8BWR4 9330182L06Rik-204ENSMUST00000134991 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Usp40Q8BWR4 Sfxn1-201ENSMUST00000021930 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Usp40Q8BWR4 Sgca-205ENSMUST00000166320 1428 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Usp40Q8BWR4 Gm5833-202ENSMUST00000190707 1932 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Usp40Q8BWR4 Asb15-201ENSMUST00000031696 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Usp40Q8BWR4 Flad1-202ENSMUST00000107426 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Usp40Q8BWR4 Olfr279-203ENSMUST00000216822 5605 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
Usp40Q8BWR4 AC107763.1-201ENSMUST00000226082 1365 ntBASIC14.46□□□□□ -0.1
Usp40Q8BWR4 Arhgap25-201ENSMUST00000071024 2635 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Srpx2-201ENSMUST00000033606 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Ddr1-212ENSMUST00000166980 3627 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Trav13-2-201ENSMUST00000103658 390 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Gm24981-201ENSMUST00000104459 132 ntBASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Gm25561-201ENSMUST00000104607 125 ntBASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Olfr1060-ps1-201ENSMUST00000118335 943 ntBASIC14.45□□□□□ -0.1
Usp40Q8BWR4 4930529I22Rik-201ENSMUST00000131509 589 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Gm15489-201ENSMUST00000132811 973 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Gm12254-201ENSMUST00000134617 471 ntBASIC14.45□□□□□ -0.1
Usp40Q8BWR4 2410152P15Rik-201ENSMUST00000137405 871 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Gm11521-201ENSMUST00000143302 329 ntTSL 3 BASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Gm11915-201ENSMUST00000153669 358 ntTSL 5 BASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Gm13842-202ENSMUST00000156331 865 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Gm1758-201ENSMUST00000164528 606 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Gm27826-201ENSMUST00000175282 255 ntBASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Gm8707-201ENSMUST00000183325 980 ntBASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Ndufc1-204ENSMUST00000193279 315 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Gm3889-201ENSMUST00000212467 612 ntBASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Map7-203ENSMUST00000213312 795 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Clrn1-201ENSMUST00000051408 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Supt4a-201ENSMUST00000093955 706 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Tmem208-202ENSMUST00000098453 950 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Dnmt3a-203ENSMUST00000111186 5424 ntAPPRIS P3 TSL 5 BASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC14.45□□□□□ -0.1
Usp40Q8BWR4 AC164441.2-201ENSMUST00000220818 2746 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Tctn3-201ENSMUST00000025981 2743 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Klk13-201ENSMUST00000066834 1809 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Cklf-202ENSMUST00000098464 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Poldip3-201ENSMUST00000058793 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Abcc10-201ENSMUST00000047970 4885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Med24-202ENSMUST00000100500 3133 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Klk1b26-201ENSMUST00000048945 1386 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Sipa1l2-202ENSMUST00000212168 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Eif2s2-201ENSMUST00000099173 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Prag1-201ENSMUST00000110492 4780 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Usp40Q8BWR4 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Rgs8-201ENSMUST00000041776 8474 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Mical1-202ENSMUST00000099934 3292 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Cycs-202ENSMUST00000161401 3123 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Fbln2-201ENSMUST00000041544 4786 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Igsf3-201ENSMUST00000043983 7371 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Gm42974-201ENSMUST00000199556 2654 ntBASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Serpina1e-202ENSMUST00000122229 1575 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 H2-M10.3-201ENSMUST00000073546 1593 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Chrm5-201ENSMUST00000099589 1599 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Dis3l-201ENSMUST00000068367 3605 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Foxr1-201ENSMUST00000098837 1968 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Zswim9-201ENSMUST00000108532 3346 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 AA474408-201ENSMUST00000098110 3339 ntBASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Acp1-202ENSMUST00000074038 2754 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Rps6ka1-209ENSMUST00000174481 2228 ntTSL 5 BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Gm13303-201ENSMUST00000117125 1284 ntBASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Pttg1ip-208ENSMUST00000162943 721 ntAPPRIS ALT2 TSL 3 BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Gm7672-201ENSMUST00000180915 872 ntBASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Gm6644-201ENSMUST00000186507 951 ntBASIC14.44□□□□□ -0.1
Usp40Q8BWR4 4930517L18Rik-201ENSMUST00000191880 482 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Gm38191-201ENSMUST00000194509 770 ntTSL 5 BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Gm43117-201ENSMUST00000198531 379 ntBASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Gm42687-201ENSMUST00000199075 164 ntBASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Gm44017-201ENSMUST00000203231 740 ntTSL 5 BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Gm8083-201ENSMUST00000203976 475 ntBASIC14.44□□□□□ -0.1
Usp40Q8BWR4 AC130217.1-201ENSMUST00000224146 909 ntBASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Tceal9-201ENSMUST00000048687 1019 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Gm8991-201ENSMUST00000073014 1075 ntBASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Slc2a10-201ENSMUST00000029196 3544 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Elavl2-207ENSMUST00000107118 3797 ntTSL 5 BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Gba-201ENSMUST00000077367 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Vwa3b-205ENSMUST00000162449 1360 ntAPPRIS P5 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 AC153524.2-201ENSMUST00000218351 1375 ntTSL 5 BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Dnajb12-204ENSMUST00000146590 3070 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 AC129336.2-201ENSMUST00000218053 3086 ntBASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Pcdhgb7-201ENSMUST00000194928 4713 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Slc37a4-207ENSMUST00000215420 2128 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Gm36211-201ENSMUST00000198171 1497 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Gm16982-201ENSMUST00000181275 2620 ntTSL 2 BASIC14.44□□□□□ -0.1
Usp40Q8BWR4 Gm3716-202ENSMUST00000198582 2879 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 64.5 ms