Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Cbr4-201ENSMUST00000034058 4309 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Ephx1-201ENSMUST00000036928 1741 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Adam6a-201ENSMUST00000053086 2558 ntAPPRIS P1 BASIC8.67□□□□□ -1.02
Hmgb3O54879 Ik-201ENSMUST00000007042 1996 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Sh2d3c-201ENSMUST00000074248 3092 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Zfp948-201ENSMUST00000088787 2612 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Exoc4-202ENSMUST00000090381 2598 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Fbxw11-202ENSMUST00000093205 3938 ntAPPRIS P4 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Cenpu-202ENSMUST00000093518 783 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Gen1-201ENSMUST00000166117 5268 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Sbno2-201ENSMUST00000042771 4227 ntAPPRIS P1 TSL 5 BASIC8.67□□□□□ -1.02
Hmgb3O54879 Cilp-201ENSMUST00000048762 4153 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Trpm5-201ENSMUST00000009390 4123 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Cdkl2-202ENSMUST00000086978 4066 ntAPPRIS P4 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Tnfaip1-201ENSMUST00000017759 3720 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Riok3-201ENSMUST00000025270 3661 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Rbm10-203ENSMUST00000084383 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Rassf5-202ENSMUST00000068564 3076 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Pla2g4a-201ENSMUST00000070200 2856 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Gfap-202ENSMUST00000077902 2600 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
Hmgb3O54879 Oprm1-216ENSMUST00000105611 2420 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Gpa33-204ENSMUST00000166860 2227 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Fam53b-202ENSMUST00000097998 4341 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Gm37975-201ENSMUST00000195494 2099 ntBASIC8.66□□□□□ -1.02
Hmgb3O54879 Tdp1-201ENSMUST00000021594 2019 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Vash2-202ENSMUST00000166139 3897 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Hcar2-201ENSMUST00000057145 1930 ntAPPRIS P1 BASIC8.66□□□□□ -1.02
Hmgb3O54879 Plrg1-204ENSMUST00000150268 1851 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Pdlim5-204ENSMUST00000168967 1755 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Ung-203ENSMUST00000112275 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Slc10a3-204ENSMUST00000114147 1708 ntAPPRIS ALT2 TSL 5 BASIC8.66□□□□□ -1.02
Hmgb3O54879 Lrrcc1-202ENSMUST00000108370 3359 ntAPPRIS P3 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Ecsit-204ENSMUST00000180180 1676 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Nudt13-203ENSMUST00000223663 1633 ntAPPRIS P1 BASIC8.66□□□□□ -1.02
Hmgb3O54879 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC8.66□□□□□ -1.02
Hmgb3O54879 F10-205ENSMUST00000152034 1449 ntTSL 5 BASIC8.66□□□□□ -1.02
Hmgb3O54879 Sult1a1-201ENSMUST00000106371 1370 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Sult1a1-202ENSMUST00000106372 1369 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Gm9200-201ENSMUST00000118513 1354 ntBASIC8.66□□□□□ -1.02
Hmgb3O54879 Gm38344-201ENSMUST00000195306 1353 ntBASIC8.66□□□□□ -1.02
Hmgb3O54879 Tbc1d5-201ENSMUST00000024717 5435 ntAPPRIS P2 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Mrps23-201ENSMUST00000024486 1332 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Gm24255-201ENSMUST00000104481 128 ntBASIC8.66□□□□□ -1.02
Hmgb3O54879 BC026585-202ENSMUST00000119891 1125 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 AU015836-201ENSMUST00000120624 674 ntTSL 3 BASIC8.66□□□□□ -1.02
Hmgb3O54879 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC8.66□□□□□ -1.02
Hmgb3O54879 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC8.66□□□□□ -1.02
Hmgb3O54879 Gm15412-201ENSMUST00000137193 1096 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 4930571N24Rik-202ENSMUST00000142914 598 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Cideb-201ENSMUST00000001497 1212 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Slc2a4rg-ps-202ENSMUST00000176590 1143 ntBASIC8.66□□□□□ -1.02
Hmgb3O54879 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Rpain-201ENSMUST00000018593 1100 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC8.66□□□□□ -1.02
Hmgb3O54879 C630004L07Rik-201ENSMUST00000193236 1275 ntBASIC8.66□□□□□ -1.02
Hmgb3O54879 Gm37284-201ENSMUST00000193607 539 ntBASIC8.66□□□□□ -1.02
Hmgb3O54879 Gm38341-201ENSMUST00000195357 515 ntBASIC8.66□□□□□ -1.02
Hmgb3O54879 Gm9678-201ENSMUST00000198979 1149 ntBASIC8.66□□□□□ -1.02
Hmgb3O54879 Gm8574-201ENSMUST00000203207 924 ntBASIC8.66□□□□□ -1.02
Hmgb3O54879 Gm17749-201ENSMUST00000216282 690 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 4930423D24Rik-202ENSMUST00000219785 554 ntTSL 5 BASIC8.66□□□□□ -1.02
Hmgb3O54879 CT009713.8-202ENSMUST00000224732 385 ntBASIC8.66□□□□□ -1.02
Hmgb3O54879 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Taar7d-201ENSMUST00000092657 1077 ntAPPRIS P1 BASIC8.66□□□□□ -1.02
Hmgb3O54879 4930572O03Rik-201ENSMUST00000092696 1169 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Mecp2-205ENSMUST00000170481 10175 ntAPPRIS ALT2 TSL 5 BASIC8.66□□□□□ -1.02
Hmgb3O54879 AC117648.1-201ENSMUST00000219777 2510 ntBASIC8.66□□□□□ -1.02
Hmgb3O54879 Osbpl5-202ENSMUST00000119499 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Rims2-201ENSMUST00000042917 4719 ntAPPRIS ALT2 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Nmnat2-201ENSMUST00000043313 4626 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Ano1-203ENSMUST00000121758 4552 ntAPPRIS P3 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Tmem184b-205ENSMUST00000228002 3315 ntBASIC8.66□□□□□ -1.02
Hmgb3O54879 Gm37516-201ENSMUST00000192593 1954 ntBASIC8.66□□□□□ -1.02
Hmgb3O54879 Slco4c1-201ENSMUST00000071985 4908 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Cyp2g1-201ENSMUST00000040944 1896 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Carf-209ENSMUST00000187978 5463 ntAPPRIS P3 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 4931423N10Rik-201ENSMUST00000028113 1842 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Vmn1r218-205ENSMUST00000227741 9624 ntAPPRIS ALT2 BASIC8.66□□□□□ -1.02
Hmgb3O54879 Arhgap32-201ENSMUST00000168954 8703 ntTSL 5 BASIC8.66□□□□□ -1.02
Hmgb3O54879 Bloc1s6-201ENSMUST00000005954 3484 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Etnppl-203ENSMUST00000166187 1712 ntAPPRIS P2 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 9530026P05Rik-204ENSMUST00000204449 1740 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Timm9-208ENSMUST00000221797 2564 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Nr1i2-201ENSMUST00000023504 2553 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hmgb3O54879 Zzz3-203ENSMUST00000106101 7539 ntAPPRIS P3 TSL 5 BASIC8.65□□□□□ -1.02
Hmgb3O54879 Vma21-202ENSMUST00000114576 4195 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
Hmgb3O54879 Htr3b-201ENSMUST00000008734 2411 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
Hmgb3O54879 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
Hmgb3O54879 Smok3a-202ENSMUST00000171498 2327 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
Hmgb3O54879 B4galt4-204ENSMUST00000114711 1481 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
Hmgb3O54879 Pcdhb10-201ENSMUST00000051126 2851 ntAPPRIS P1 BASIC8.65□□□□□ -1.02
Hmgb3O54879 Pmel-201ENSMUST00000054125 2130 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
Hmgb3O54879 Rpl22-204ENSMUST00000139685 2051 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
Hmgb3O54879 Slco5a1-205ENSMUST00000146763 3437 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
Retrieved 100 of 76,532 protein–RNA pairs in 121 ms