Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Prpf40aQ9R1C7 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Prpf40aQ9R1C7 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Prpf40aQ9R1C7 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC21.86■■□□□ 1.09
Prpf40aQ9R1C7 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Prpf40aQ9R1C7 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC21.85■■□□□ 1.09
Prpf40aQ9R1C7 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Prpf40aQ9R1C7 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Prpf40aQ9R1C7 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Prpf40aQ9R1C7 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Prpf40aQ9R1C7 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Prpf40aQ9R1C7 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
Prpf40aQ9R1C7 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Prpf40aQ9R1C7 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Prpf40aQ9R1C7 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
Prpf40aQ9R1C7 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Prpf40aQ9R1C7 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Prpf40aQ9R1C7 Krt8-ps-201ENSMUST00000208495 945 ntBASIC21.84■■□□□ 1.09
Prpf40aQ9R1C7 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Prpf40aQ9R1C7 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC21.84■■□□□ 1.09
Prpf40aQ9R1C7 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Prpf40aQ9R1C7 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Prpf40aQ9R1C7 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Prpf40aQ9R1C7 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Prpf40aQ9R1C7 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Prpf40aQ9R1C7 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
Prpf40aQ9R1C7 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Prpf40aQ9R1C7 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Prpf40aQ9R1C7 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Prpf40aQ9R1C7 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Prpf40aQ9R1C7 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Prpf40aQ9R1C7 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Prpf40aQ9R1C7 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Prpf40aQ9R1C7 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Prpf40aQ9R1C7 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Prpf40aQ9R1C7 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Prpf40aQ9R1C7 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Prpf40aQ9R1C7 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Prpf40aQ9R1C7 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
Prpf40aQ9R1C7 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Prpf40aQ9R1C7 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Prpf40aQ9R1C7 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Prpf40aQ9R1C7 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Prpf40aQ9R1C7 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Prpf40aQ9R1C7 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Prpf40aQ9R1C7 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC21.82■■□□□ 1.08
Prpf40aQ9R1C7 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
Prpf40aQ9R1C7 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
Prpf40aQ9R1C7 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Prpf40aQ9R1C7 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC21.81■■□□□ 1.08
Prpf40aQ9R1C7 Gm37035-201ENSMUST00000194809 2148 ntBASIC21.81■■□□□ 1.08
Prpf40aQ9R1C7 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Prpf40aQ9R1C7 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Prpf40aQ9R1C7 Gm13241-201ENSMUST00000094493 780 ntBASIC21.81■■□□□ 1.08
Prpf40aQ9R1C7 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Prpf40aQ9R1C7 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Prpf40aQ9R1C7 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Prpf40aQ9R1C7 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Prpf40aQ9R1C7 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
Prpf40aQ9R1C7 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Prpf40aQ9R1C7 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Prpf40aQ9R1C7 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC21.8■■□□□ 1.08
Prpf40aQ9R1C7 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Prpf40aQ9R1C7 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
Prpf40aQ9R1C7 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
Prpf40aQ9R1C7 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Prpf40aQ9R1C7 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Prpf40aQ9R1C7 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Prpf40aQ9R1C7 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
Prpf40aQ9R1C7 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Prpf40aQ9R1C7 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC21.79■■□□□ 1.08
Prpf40aQ9R1C7 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Prpf40aQ9R1C7 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Prpf40aQ9R1C7 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Prpf40aQ9R1C7 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
Prpf40aQ9R1C7 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Prpf40aQ9R1C7 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
Prpf40aQ9R1C7 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Prpf40aQ9R1C7 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
Prpf40aQ9R1C7 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Prpf40aQ9R1C7 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Prpf40aQ9R1C7 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Prpf40aQ9R1C7 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Prpf40aQ9R1C7 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Prpf40aQ9R1C7 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Prpf40aQ9R1C7 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Prpf40aQ9R1C7 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC21.77■■□□□ 1.08
Prpf40aQ9R1C7 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
Prpf40aQ9R1C7 AC166356.1-201ENSMUST00000228236 1426 ntBASIC21.77■■□□□ 1.08
Prpf40aQ9R1C7 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
Prpf40aQ9R1C7 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Prpf40aQ9R1C7 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Prpf40aQ9R1C7 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Prpf40aQ9R1C7 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
Prpf40aQ9R1C7 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
Prpf40aQ9R1C7 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC21.76■■□□□ 1.07
Prpf40aQ9R1C7 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Prpf40aQ9R1C7 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Prpf40aQ9R1C7 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Prpf40aQ9R1C7 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC21.75■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms